Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi320g00006 ATGTTCGACCCGTTCCTCTTCCTCCAGAACCACCTCCAAGGTCTTCGCGCCGATGGGGCTAACATCCAATTCGAGATCAATCACCCTTCTGAACCGGGGTTTCGCCTCCCCACCAACATCGGCGATTACTTCCTCGGCCCTGGCCTCGAGCAATTGATTCAGCAGCTCGCCGAGAACGACCCCAACCGTTATGGGACGCCGCCGGCATCGAAAGATGCCATTCAGAATCTTCCCAACGTAACTGTCGACGACGAGTTGTTGAACTCGGAGTTGAACCAGTGCGCGGTTTGTCAGGACGAGTTCGAGAAGGGTTCGCAGGTGAAGCAAATGCCTTGCAAGCACGTGTACCATGACGATTGCTTGCTTCCCTGGCTTCAATTGCATAACTCTTGCCCTGTGTGCCGATATGAATTGCCTACCGACGATGCCGATTATGAGAATCGGATCAGTGGGGATAGTGGTGAGGGGTCGAGGTCTGTTGATAATGGTAGCAGTGGCGGCGGTGGAGGGGGAGGGGGAAATAGACCCGTTCACAGGACTTTTAGAATATCATTGCGGTACCCATTTGGTGCAGGTGAATCTGCTCAGGAAAGCGGTGAAAGAGGATTGGGAAATAGGGAAGAAGATTTGGATTGA 636 0.5314 MFDPFLFLQNHLQGLRADGANIQFEINHPSEPGFRLPTNIGDYFLGPGLEQLIQQLAENDPNRYGTPPASKDAIQNLPNVTVDDELLNSELNQCAVCQDEFEKGSQVKQMPCKHVYHDDCLLPWLQLHNSCPVCRYELPTDDADYENRISGDSGEGSRSVDNGSSGGGGGGGGNRPVHRTFRISLRYPFGAGESAQESGERGLGNREEDLD 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi320g00006 211 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 51 139 - -
Sebi320g00006 211 Pfam Ring finger domain 92 135 IPR001841 -
Sebi320g00006 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 141 IPR013083 -
Sebi320g00006 211 MobiDBLite consensus disorder prediction 145 211 - -
Sebi320g00006 211 SMART ring_2 94 134 IPR001841 -
Sebi320g00006 211 SUPERFAMILY RING/U-box 73 141 - -
Sebi320g00006 211 CDD RING-H2_RNF126-like 93 135 - -
Sebi320g00006 211 ProSiteProfiles Zinc finger RING-type profile. 94 135 IPR001841 -
Sebi320g00006 211 FunFam E3 ubiquitin-protein ligase RING1-like 55 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi320g00006 Sebi-Chr320 66886 67521 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi320g00006 38 160 C3H Transcription Factor Family AT5G01980 46.341 7.64e-34 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi320g00006 K11982 - gmx:100785289 312.383