Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi31g00253 ATGGATTCTGGAAAGTCCAACCAAGCACGTGACTTCGACTTGAACATTCCATTTACGGAGGATTTGGATTTGAATGCTGAAAACCAGCTCATTCACATCAACACTCCACCGGCTTCTCAAATTAGCACTGAGGACATAAACATAACTGCTGCAAAGAATGAAAATGAAGTTCATGAATCTTCTGCCGTGGAGGACACAACTCCAGCTCTTGCAAATTCTGATGATACGAAGCAGCAGGTTCGCATGTATGTTTCCTCTCTTCCTGGCACCGGAGGAGGATTCATACCGGGGGGACGCCGCCGTTACCACCGCCGTGGAGCAGCAGTGCTGGCAAGTGATCCAGAAAGATTCTGCACAAATTATTATTGCAGGACAAGAAAAACTCCATTGTGGCGCAAGGGACCTCTGGGAACAAAGACTTTGTGCAATGCATGTGGCATTTATTACGTTAAGCATGTGAAGAGCAGGGGGAGTCGCATCCCTCAAGTGCCAATTGAAGAAGGTGATGCTTCTTCCTCCAGTGTAGTCCCTGATGGTGCAGGTGCTCCTCCAAGTTCTGTTCCAGCTGCAACTGATCCAAAAGGGTCTTCAGATTTCTAA 600 0.475 MDSGKSNQARDFDLNIPFTEDLDLNAENQLIHINTPPASQISTEDINITAAKNENEVHESSAVEDTTPALANSDDTKQQVRMYVSSLPGTGGGFIPGGRRRYHRRGAAVLASDPERFCTNYYCRTRKTPLWRKGPLGTKTLCNACGIYYVKHVKSRGSRIPQVPIEEGDASSSSVVPDGAGAPPSSVPAATDPKGSSDF 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi31g00253 199 Pfam GATA zinc finger 123 152 IPR000679 GO:0006355|GO:0043565
Sebi31g00253 199 ProSiteProfiles GATA-type zinc finger domain profile. 123 156 IPR000679 GO:0006355|GO:0043565
Sebi31g00253 199 Gene3D - 111 168 IPR013088 GO:0006355|GO:0008270
Sebi31g00253 199 CDD ZnF_GATA 117 152 IPR000679 GO:0006355|GO:0043565
Sebi31g00253 199 PANTHER OS01G0976800 PROTEIN 52 154 - -
Sebi31g00253 199 SMART GATA_3 112 165 IPR000679 GO:0006355|GO:0043565
Sebi31g00253 199 MobiDBLite consensus disorder prediction 160 199 - -
Sebi31g00253 199 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 111 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi31g00253 Sebi-Chr31 2791547 2792734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi31g00253 118 159 C2C2-Gata Transcription Factor Family AT3G20750 52.381 1.15e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sebi31g00253 GATA 4.9e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi31g00253 - - gmx:102663335 142.124