Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi31g00249 ATGGGAAGAAGAAACTCATCACTGCAACAAAAACTTCGTCGTCGAGTGGAGGCCGTGTGCCCTACCGCCGACGAAATTGTCAATCATCTTCGGTTAACCTACTCTGATTACCAGCGAACCAAGCAGCAAACTCTGAAACGATTTGTTCAAGAAGCTCTTCAATCCACACGGAACCATGGCGATGAGGATGAGGATCGAAATTCCTCTCGAAAGAGACGGAAGGAAATTGACGAAGGTGATAAAGAGAGATTGCAAAATATGGAAGCGAGTATGCAAGTCCCATCGACCCCATCTTATTCAACTTCGGAGAGTGGCGAAGAAGACGGAACTGCGTCGGTGTCGTCAGTGGAACCTTGTCTTGACTTGATGAAGACAATGCTGCGGAATTCGTATACTGCAACTAAGGTTGTGGTGGAGGGAAAGAATGTTGAAATGGAGGTGAGCAATAGTGGTAAGGTCATTAACACTGTTAATGAAGGTGAAGCCAGGTCGGCGGGGAGGCAATTGAAGGGTTCTATCTCAAACGGCGGTGGTGATGATGATGTTGAGGTGAAGGGGAAGGAGAAGGGGAATGATGGGCCAAGGTTTAGGGATTTGGGTGGGATGAAAGAGGTTTTGGAGGAAGTGAAGAGGGAGGTGATTCTGCCGTTCTATCATCCCCACGTGCCTAAAGATTTAAAACCCTCTGGCATTTTGTTGCATGGACCTTCTGGCTGTGGGAAGACTATACTGGCTCGTGCTATTGCTAATGAGACTGGTCTTCCTTTCTATCAAATGGAGTCAGGTGCATTGGAAGAAAATATTAGACAGATTTTCTATAAAGCATATAGGACCACCCCATCAATTGTCTTTATTGATGAGATTGATGCAGTTGCTTCAAAAAGAGAGAATTTACAGAGGGATCGAATTGTTACTAAGTTAATTACTTGCATGGATCAACCACCTGATGATTTAGAGGGTCCTTCTGGCTCCATTCTTGTAATTGGAGCTACAAGTAGGCCAGATGCTATTGACCCTGCCCTTAGAAGGCGGTTTGATCGTGAGATTATTATTGGCATTCCTGATGAATCTGCTAGGGAAGATATCCTTTCCATGCTTATTACTCGCAATAATCTTAAACTCGAGGGTCCGATTGATCTACAAAAGATAGCCAGGGCTACACCAGGATTTGTTGGTGCTGATTTGGTAGCTCTGACTAAGCAGGCTAGTAATCTGGCAATGAATAAAATAGTTGATGAAAGGTATGTCACGAGTGAGCCTCCTGAAGATTGGTGTATAGAACCTTGGTTGACAGAAGAAGTGGATAAGCAGGCCATCAAAATGTCTGATTTTGAGGAAGCAGTCAAAAGGGTGCAACCATCAACCAAAAGAGAAGGGTTCTCTCCCATTCCTAATGTAAAATGGGAAGATGTTGGTGGGCTTGATCACTTAAGACAGGAGTTTGAAGACTATATTATAAGGCGTATAAAATATCCTGAGGATTATGAGAGATTTGGGTTGAAATCAGAGGCAGGAATTTTGCTTTATGGACCTCCAGGTTGTGGTAAAACACTGATTGCCAAAGCTGTTGCCAATGCGGCAGGAGCTAATTTCAGACATATTAAGGTGGATGCTTTGGCAACCAAACGTGGTAAAGAAGGTGGATGGGTTACTGAACGACTATTGAACCAGTTGCTTATCGAGTTAGATGGCGCAGAGCAGCGAAGAGGTGTTTTTGTGATTGGTGCAACAAATAGGCCTGAGGTGATGGATCCTGCTCTTTTACGGCCTGGTAGGTTAGGAAAACTTCTTTACGTTCCTCTCCCAAGCCCAGACGAGCGAGTTTTAATATTGAAAGCTCTTACAAGGACGATACCTGTTGATGCCAGTGTGGATTTGAACGTCATAGGAACATCCGAAGCTTGTGACAACCTGAGTGGCGCTGATCTTGCTGCATTGATGAATGAAGCAGCACTGGCTGCTATTAGAGAGAGGAGGGCCTCAACTGATACAACTCGTGATACATTGAACACAGTCAAGACACATCATATTCACGAAGCACTGAGTAAAGTCTTTCCCTCTGTGTCAGACATGGAGTGTAAAAGAAAGAAGCGAGAAAGAAACGGGGGGAAATCAATCGTTTGGGAGAGAGTGGAAGAGGGGGAGAAAGGAGAAAAAGCGGTGTGGGACCGAGCAACAAATTTTCTCATCACCGGAAGCGAGGAAAAGGAGACTGGGAAGAAGACAACAATGACATTCGTTCTCCCACTTTTACCCATCATCCAAGTGCTAGCATCTACATTTTGTAAGTTGCAGTGA 2298 0.4465 MGRRNSSLQQKLRRRVEAVCPTADEIVNHLRLTYSDYQRTKQQTLKRFVQEALQSTRNHGDEDEDRNSSRKRRKEIDEGDKERLQNMEASMQVPSTPSYSTSESGEEDGTASVSSVEPCLDLMKTMLRNSYTATKVVVEGKNVEMEVSNSGKVINTVNEGEARSAGRQLKGSISNGGGDDDVEVKGKEKGNDGPRFRDLGGMKEVLEEVKREVILPFYHPHVPKDLKPSGILLHGPSGCGKTILARAIANETGLPFYQMESGALEENIRQIFYKAYRTTPSIVFIDEIDAVASKRENLQRDRIVTKLITCMDQPPDDLEGPSGSILVIGATSRPDAIDPALRRRFDREIIIGIPDESAREDILSMLITRNNLKLEGPIDLQKIARATPGFVGADLVALTKQASNLAMNKIVDERYVTSEPPEDWCIEPWLTEEVDKQAIKMSDFEEAVKRVQPSTKREGFSPIPNVKWEDVGGLDHLRQEFEDYIIRRIKYPEDYERFGLKSEAGILLYGPPGCGKTLIAKAVANAAGANFRHIKVDALATKRGKEGGWVTERLLNQLLIELDGAEQRRGVFVIGATNRPEVMDPALLRPGRLGKLLYVPLPSPDERVLILKALTRTIPVDASVDLNVIGTSEACDNLSGADLAALMNEAALAAIRERRASTDTTRDTLNTVKTHHIHEALSKVFPSVSDMECKRKKRERNGGKSIVWERVEEGEKGEKAVWDRATNFLITGSEEKETGKKTTMTFVLPLLPIIQVLASTFCKLQ 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi31g00249 765 ProSitePatterns AAA-protein family signature. 571 589 IPR003960 GO:0005524|GO:0016887
Sebi31g00249 765 Gene3D - 461 537 IPR027417 -
Sebi31g00249 765 Gene3D - 538 601 IPR027417 -
Sebi31g00249 765 MobiDBLite consensus disorder prediction 88 111 - -
Sebi31g00249 765 MobiDBLite consensus disorder prediction 54 115 - -
Sebi31g00249 765 MobiDBLite consensus disorder prediction 180 195 - -
Sebi31g00249 765 PANTHER AAA-FAMILY ATPASE 81 535 - -
Sebi31g00249 765 SMART AAA_5 502 603 IPR003593 GO:0016887
Sebi31g00249 765 SMART AAA_5 227 355 IPR003593 GO:0016887
Sebi31g00249 765 Pfam ATPase family associated with various cellular activities (AAA) 506 535 IPR003959 GO:0005524|GO:0016887
Sebi31g00249 765 Pfam ATPase family associated with various cellular activities (AAA) 536 600 IPR003959 GO:0005524|GO:0016887
Sebi31g00249 765 Pfam ATPase family associated with various cellular activities (AAA) 231 351 IPR003959 GO:0005524|GO:0016887
Sebi31g00249 765 Gene3D - 354 451 - -
Sebi31g00249 765 Pfam AAA+ lid domain 378 418 IPR041569 -
Sebi31g00249 765 Pfam AAA+ lid domain 624 666 IPR041569 -
Sebi31g00249 765 MobiDBLite consensus disorder prediction 56 85 - -
Sebi31g00249 765 Gene3D - 195 455 IPR027417 -
Sebi31g00249 765 MobiDBLite consensus disorder prediction 161 195 - -
Sebi31g00249 765 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 464 688 IPR027417 -
Sebi31g00249 765 Gene3D - 602 692 - -
Sebi31g00249 765 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 458 IPR027417 -
Sebi31g00249 765 ProSitePatterns AAA-protein family signature. 325 344 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi31g00249 Sebi-Chr31 2726023 2730774 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi31g00249 226 687 Calmodulin-binding Proteins AT3G56690 31.818 2.01e-72 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi31g00249 K14571 - gmx:100809594 790.415