Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi31g00236 ATGGCTTCCCTGAGCCTTCTTATCCTCACTACACTCCTCTTTCTTCAACTTTTGTTAGTTTTTGCAAACATTAATCTGAATTCCACACTCTCCACCAATGACAACCTTGCATGGCTTTCACCTTCGGGTGAATTTGCTTATGGATTTCGCCAACTTAAGAATAGCACAAGCCTCTTCACACTTGCCATCTGGTATAACAAAATACCCCTCAAAACCATTGTTTGGAATGCAGAAGCAGAAGCACCAAAAGGATCACAGGTTCAACTCACATCACAAGGGCTCATGCTGACAAGTCCTGAAGCAGAGTCCCTATGGATGGCAAAACCAGACGCCACTTTTTCCTACGGAGCTATGCTTGACACTGGGAACTTTGTGCTTGTAAACGAACAATCTCAATCTGTTTTTGTATGGGAAAGTTTCAAGAATCCCACAGACACTTTGTTACCTGACCAGTCTCTGGAGCTAGATGTCAAGCTAACTTCTCGGTTCACAGAAACCAATTACACAACAGGAAGGTTCCAACTTTATTTTGAGGAGGACAATAATGTCTTGTTGAGTCCCCTTGCTTGGCCTTCTCAATTTCGTTATGGTTCCTATTATAAAATTGATGCTTCTGGCTCTGCTTCAAGATTGGTGTTTCATAAATCAGGAGATATTTATGTAGAGACAACAAATGGGACTAAAGTGCAACCTCAAGGTGCAAAATGGGAATACATAACTCTCAATCCTAAGGTGTATTATTACAGAGCAACACTTGATTTCCATGGAGTTTTCACGCAATATGCTTATCCAAAGGACTCCACTTCAGAGCAAGAATGGAGAATTTTGAGCTACTGCTCCATGGAAAATCAGAGCCAGAGGCCTACTTGCAAATGCCCTGATGGGTATTCACTTGTGGATCCAAGTAATGATTTTGGTGGCTGCCAACTCAAATCCACCCTGGTTTGTGGAGCTGATGTTGAAGCAAGGCCAGAAGACCTATATGAATTACTTGTGGCAAGAGATATAAATTTTCCTTTTGGAGATTATGAAAGGATAGAACCTTTTTCTCAAGAAGACTGCCAACAATCCTGCTTTCAAGATTGCATGTGTGCTATTGCACATTATAATGTGGATGCACGCCGTTGTTGGAAGAAAAGAATACCCCTTCTTAATGGAAGAGTAGATAGAGGCCCAGATTTGGTATTTATCAAAACAAGAGTTAGTCCTCTGAGAAACTTTGATAATGGCAAACTAGATCATGTGGTTGCCGTCAAGAAATTGGACAGATTAGCAGAAGAAGGAAGAGATAAGGAATTTAAGACTGAGTTAAGTGCCATCAGTAAAACCTGCCACAAAAATCCGGTAAGGTTGATTGGATTTTGTGATGAGGGGATCCACAAACTTCTGGTCTATGAGTTCATGAGCAATGGCACTCTTGCAAACATCCTATTTGCACAACCCAAACCCATTTGGAATCTAAGGGTTGGATTTGCTTTGGGGATTGCAAGGGGATTGGTGTACTTACATGAAGAGTGTGACACTCCCATCATTCATTGTGATATAAAACCCCAAAATGTACTCATAGATGACCATTTCACTGCTAAGATCTCTGATTTTGGGTTGGCCAAGTTGTTATTGCTAAACCAAAGTAGAACCAATACCATGATACGAGGAACTAAAGGGTATGTAGCACCTGAATGGTTCAAGAATGTTCCTGTGACGGTTAAAGTGGATGTTTATAGCTTTGGTGTCATGTTGTTGGAAATCATTTGCTGCAGAAGAAATGAGCTGCTGATGGAGTCTCATGAGGAGAAAGCAATATTGTCAGATTGGGCTTATGATTGCTATATGGAAGGAAGAATAGATGCTCTGTTGGATGATGATGACAAGGAGGCTAGGGCTGACCATGACAGGTTACAAAGGTGGGTAAAGATAGCAATTTGGGGCATTCAAGAGCATCATGAAATCAGGCCAACAATGGGGATGGTCATGCAAATGCTCCAAGGCTTTGTTCAAGTCCCTGATCCACCATCTCCTTCTTCCTTCAATTAG 2034 0.4149 MASLSLLILTTLLFLQLLLVFANINLNSTLSTNDNLAWLSPSGEFAYGFRQLKNSTSLFTLAIWYNKIPLKTIVWNAEAEAPKGSQVQLTSQGLMLTSPEAESLWMAKPDATFSYGAMLDTGNFVLVNEQSQSVFVWESFKNPTDTLLPDQSLELDVKLTSRFTETNYTTGRFQLYFEEDNNVLLSPLAWPSQFRYGSYYKIDASGSASRLVFHKSGDIYVETTNGTKVQPQGAKWEYITLNPKVYYYRATLDFHGVFTQYAYPKDSTSEQEWRILSYCSMENQSQRPTCKCPDGYSLVDPSNDFGGCQLKSTLVCGADVEARPEDLYELLVARDINFPFGDYERIEPFSQEDCQQSCFQDCMCAIAHYNVDARRCWKKRIPLLNGRVDRGPDLVFIKTRVSPLRNFDNGKLDHVVAVKKLDRLAEEGRDKEFKTELSAISKTCHKNPVRLIGFCDEGIHKLLVYEFMSNGTLANILFAQPKPIWNLRVGFALGIARGLVYLHEECDTPIIHCDIKPQNVLIDDHFTAKISDFGLAKLLLLNQSRTNTMIRGTKGYVAPEWFKNVPVTVKVDVYSFGVMLLEIICCRRNELLMESHEEKAILSDWAYDCYMEGRIDALLDDDDKEARADHDRLQRWVKIAIWGIQEHHEIRPTMGMVMQMLQGFVQVPDPPSPSSFN 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi31g00236 677 Pfam D-mannose binding lectin 72 158 IPR001480 -
Sebi31g00236 677 Gene3D Phosphorylase Kinase; domain 1 406 468 - -
Sebi31g00236 677 Pfam Protein kinase domain 414 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi31g00236 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 510 522 IPR008271 GO:0004672|GO:0006468
Sebi31g00236 677 ProSiteProfiles Bulb-type lectin domain profile. 21 139 IPR001480 -
Sebi31g00236 677 ProSiteProfiles Protein kinase domain profile. 382 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi31g00236 677 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 414 673 - -
Sebi31g00236 677 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 468 669 - -
Sebi31g00236 677 SUPERFAMILY alpha-D-mannose-specific plant lectins 59 186 IPR036426 -
Sebi31g00236 677 Gene3D - 21 141 IPR036426 -
Sebi31g00236 677 SMART blect_4 27 143 IPR001480 -
Sebi31g00236 677 Gene3D Transferase(Phosphotransferase) domain 1 469 668 - -
Sebi31g00236 677 SUPERFAMILY Protein kinase-like (PK-like) 413 661 IPR011009 -
Sebi31g00236 677 Gene3D - 143 270 IPR036426 -
Sebi31g00236 677 SMART serkin_6 394 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi31g00236 Sebi-Chr31 2596581 2598947 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi31g00236 415 663 Receptor kinase-like Gene Family AT5G16000 40.400 4.00e-54 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Sebi31g00236 Pkinase 4.2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi31g00236 - - gmx:100775269 495.352