Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi31g00221 ATGGAGCAGCCACAGCTCTTAGTGGACCAAAACTTCCCCCTCTTCAAATCAACCCGCAAACCCTCCAAAAACCCCTCAGCCTCCGCCAACAACAAAAATCCTAACTCCCATGCCAAAAACCCAGAAGCCACTGCCAACAAAAACCTGAATTCTGATGCCGATAACTTCAAAGACACCGCTCCAGCTGCCACGTTCGCCGATCTTGGACTGGCTGAATGGGCGGTGCAGACGTGCAAGGCGCTCAGAATGCAGGTGCCGCGGCGCGTGCAGCGGCAGTGCATCCCGAGGGTCCTGGAGGGCCGCCACGTACTCGGCATCGACGAGACTGGCAGCGGCAAAACGGCGGCATTTGCCCTCCCCATCCTGCATCGCCTCGCTGAGCACCCGTTTGGCGTGTTTGCCCTTGTGGTGACTCCCACACGCGAGCTTGCCTTCCAGCTTGCCGAGCAGTTCCGCGCCCTCGGCTCCTCCATCCGCCTCCGCATCGCCGTGGTGGTTGGCGGCATGGACATGCTCAAACAGGCCAGGGACTTGGTCGCCAGGCCTCACATTGTCATCGCCACCCCCGGGAGAATCAAGCTCTTGCTTGAGGATAATCCTGATATCCCTCCTATTTTCTCTAGGATTAAGTTCGTTGTCTTGGATGAAGCAGATCAAGTCCTTGATGTTGATTTTCAGGAGGAATTGAAATTTATCTTTCAATGCTTACCAGAAAATCGGCAAAACCTGTTCTTTTCCGCAACAACAACAAATAATCTGCAAAAGTTGCGTGAACGTTACCAGGATAAGCTGTATGTCTACGAGGCATATGAAGGCTTGAAAACAGTTGAAACCCTTAAGCAACAAGTTATATTTATTCCTAAAAAGGTGAAGGATGTATATTTGATGCATATCTTGTCTAAAATGGAAGAAATGGCATTCGGTCTGCCATTGTATTTACCAACACACGCAGGAATTGGACCGTGTTTGCATAACAATTGTTCTGCTACTATCAATTTGTCAGTGCCAGGATTGACATTCCTTAATTACAGAGATTGTCATCGTTTAAGTTTAATGCTGGATGTGCTTGATCAAGAAGCTGCAGCTCTATATTCATACAAAACACAGGTTCAGAGGCTCGAGGCTCTCAATCAATTTAAATCAGGAAAGGTTTCTGTACTACTTACAACTGATGTTGCCTGCCGTGGTTTGGATATTCCTACAGTTGACCTTGTTATCAATTATGATGTTCCAAGCATTCCACGAAATTATATCCATCGTGTAGGTCGTACTGCAAGAGCGGGTAGAGGAGGACTGGCTTTGAGCCTTGTCACCCAGAATGATGTTGATCTCATTCATGAAATAGAGACTCTTATTGAAAGGCAACTTGAAATGATTGAATACAAAGAAAATGAGGTGCTTTCTCTCATGAAAAAGGTTTTCAGTGCTAAGAATGTAGCAGAAATGAAGATGATGGATGATGGGTTTGAGGAGAAAGAAAACGAGCGGAAAAAGCAAAAATTGAAAATGCTAGCTGAGAAAGGGTTGTTAAAGAAAAGAAGTAAAAAGAGAAAAAGAAATAAAGATTTTGCAGAGAAAGGAAAACAACAGAAAAAAGAGGAAGTGGGAGCATTTGAAGATACGGCATCACAAAAGAAAAGGAGTAAGAAGAGAGTGTAA 1659 0.4569 MEQPQLLVDQNFPLFKSTRKPSKNPSASANNKNPNSHAKNPEATANKNLNSDADNFKDTAPAATFADLGLAEWAVQTCKALRMQVPRRVQRQCIPRVLEGRHVLGIDETGSGKTAAFALPILHRLAEHPFGVFALVVTPTRELAFQLAEQFRALGSSIRLRIAVVVGGMDMLKQARDLVARPHIVIATPGRIKLLLEDNPDIPPIFSRIKFVVLDEADQVLDVDFQEELKFIFQCLPENRQNLFFSATTTNNLQKLRERYQDKLYVYEAYEGLKTVETLKQQVIFIPKKVKDVYLMHILSKMEEMAFGLPLYLPTHAGIGPCLHNNCSATINLSVPGLTFLNYRDCHRLSLMLDVLDQEAAALYSYKTQVQRLEALNQFKSGKVSVLLTTDVACRGLDIPTVDLVINYDVPSIPRNYIHRVGRTARAGRGGLALSLVTQNDVDLIHEIETLIERQLEMIEYKENEVLSLMKKVFSAKNVAEMKMMDDGFEEKENERKKQKLKMLAEKGLLKKRSKKRKRNKDFAEKGKQQKKEEVGAFEDTASQKKRSKKRV 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi31g00221 552 SMART ultradead3 82 282 IPR014001 -
Sebi31g00221 552 SMART helicmild6 347 428 IPR001650 -
Sebi31g00221 552 Gene3D - 12 267 IPR027417 -
Sebi31g00221 552 MobiDBLite consensus disorder prediction 523 546 - -
Sebi31g00221 552 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 53 262 IPR027417 -
Sebi31g00221 552 Gene3D - 332 550 IPR027417 -
Sebi31g00221 552 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 100 477 IPR027417 -
Sebi31g00221 552 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 33 550 - -
Sebi31g00221 552 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 94 267 IPR014001 -
Sebi31g00221 552 CDD SF2_C_DEAD 279 437 - -
Sebi31g00221 552 MobiDBLite consensus disorder prediction 489 508 - -
Sebi31g00221 552 MobiDBLite consensus disorder prediction 1 55 - -
Sebi31g00221 552 Pfam DEAD/DEAH box helicase 88 256 IPR011545 GO:0003676|GO:0005524
Sebi31g00221 552 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 325 467 IPR001650 -
Sebi31g00221 552 MobiDBLite consensus disorder prediction 489 552 - -
Sebi31g00221 552 Pfam Helicase conserved C-terminal domain 338 428 IPR001650 -
Sebi31g00221 552 CDD DEADc_DDX49 65 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi31g00221 Sebi-Chr31 2452270 2457999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi31g00221 64 441 Eukaryotic Initiation Factors Gene Family AT3G13920 31.008 1.28e-44 161