Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi31g00215 ATGTCAGGCTTACTGGCCATCATAGAGGAAAATCTCATGGTTCAGTACAGGATTTGCATGGACCAGCCACTAGTAATTCAAAATAGTTGCTGGGCAAGCTTACCCCCAGAGTTACTATATGATGTCATTAGACGGCTAGAGGAGAGTGAAAATACGTGGCCTGCTCGAAAGCATGTTGTTGCATGTGCTGCAGTTTGCCAGTCTTGGAGAAATATGTGCAAGGAAATTGTCAAGAACCCAGAGTTTTCTGGCAAACTTACATTTCCTGTTTCCCTGAAGCAGCATTGGCTCATTGCTCTGAGATTGAAAATCAATGTTGACCAGGTGAGATTTACATATGGTCTTTGCAGTAGTGCTTTGTTAGTTGAAAATGGGAAATTCCTCCTTTCTGCTAAGAGGACGCGAAGAACAACTTACACCGAGTATGTCATTTCCATGGATGCTGACAACATCTCTAGATCAAGTAATACTTACATTGGAAAACTGAGATCAAACTTTCTTGGTACAAAATTCATTATATATGATACACAGCCTCCATACTCTTCTGCCCATATATGCCCTCCTGGGACTGGCAAGACGAGCCGCAGATTTTATTCTAAAAAGGCCCAAGGAAGATGCACTGCATTATGGCATTCAATACCAGCTTCAGCACTTGATGCGGGTGGCACTGTTCCTGGCCAACCAGAGCTCCTTCCCCGTTCCCTGGAGGACTCATTTCGGAGCATCTCATTTTCAAAGTCTCTAGATCATTCAATCGAATTCAGCAGTGCACGTTTTTCTGAGATTGGGGGATCCTGTAATGAGGATGAGGATGGCAAGATGAGACCCCTTGGTTCTGAAAAACAAGCCGCCAAGTTGATTGCTGCCACCCAACCAGCTGCTGGAGCACCCACACCATCTCAACCAGCTCCACCAGAGCATGATAAAATTATTCTGCAGTTTGGGCAAAGTTGGGAAAGATATGTTCACGATGGATTATCGGTATCCCTTATCTGCATTCCAAGCTTTTGCAATATGCTTGAGCAGCTTTGA 1032 0.4438 MSGLLAIIEENLMVQYRICMDQPLVIQNSCWASLPPELLYDVIRRLEESENTWPARKHVVACAAVCQSWRNMCKEIVKNPEFSGKLTFPVSLKQHWLIALRLKINVDQVRFTYGLCSSALLVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYSSAHICPPGTGKTSRRFYSKKAQGRCTALWHSIPASALDAGGTVPGQPELLPRSLEDSFRSISFSKSLDHSIEFSSARFSEIGGSCNEDEDGKMRPLGSEKQAAKLIAATQPAAGAPTPSQPAPPEHDKIILQFGQSWERYVHDGLSVSLICIPSFCNMLEQL 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi31g00215 343 SUPERFAMILY Tubby C-terminal domain-like 80 237 IPR025659 -
Sebi31g00215 343 CDD F-box_AtTLP-like 31 75 - -
Sebi31g00215 343 Gene3D Tubby Protein; Chain A 88 206 IPR025659 -
Sebi31g00215 343 Pfam Tub family 101 203 IPR000007 -
Sebi31g00215 343 SUPERFAMILY F-box domain 27 75 IPR036047 GO:0005515
Sebi31g00215 343 Pfam F-box domain 31 79 IPR001810 GO:0005515
Sebi31g00215 343 PRINTS Tubby superfamily signature 307 326 IPR000007 -
Sebi31g00215 343 PRINTS Tubby superfamily signature 142 158 IPR000007 -
Sebi31g00215 343 PRINTS Tubby superfamily signature 158 182 IPR000007 -
Sebi31g00215 343 PANTHER TUBBY-RELATED 22 184 - -
Sebi31g00215 343 FunFam Tubby-like F-box protein 26 79 - -
Sebi31g00215 343 Gene3D - 26 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi31g00215 Sebi-Chr31 2379264 2381984 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi31g00215 24 292 TUB Transcription Factor Family AT1G76900 52.564 4.81e-91 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Sebi31g00215 Tub 9.9e-28 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi31g00215 K19600 - gmx:100814578 447.973