Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi31g00175 ATGTTGTGGTTAGACATGGAAGTATTGCCCTCCTTAGGTGGTTCACTTTTTCTTTTTGATCGGAAGGTTTTGAGATACTTTAGAAAAGATGGGCATAATTGGAGAAAGAAAAAGGATGGAAAAACTGTGAAAGAAGCTCATGAAAAGTTGAAGGTTGGAAGTGTTGATGTGTTACACTGCTACTATGCCCATGGAGAAGAAAATGAAAATTTTCAAAGACGAAGCTATTGGATGCTTGAACCGGATATGATGCACATAGTATTTGTCCACTACCTGGAAGTTAAGGGTAACAAGTCAAATATTGGAGGAAATGCTGATAGTGATGAGGCCATATCAGATTCCCAAAAGGTCAACTCTCCGTCATCTGGCCTTCCCACAAGTTATAGTAGTGTGCCTTCACTGAGTACAGATTCCGTGAGCCCAACGACCAGTTTGACATCTTTACGTGAAGATGCTGATTCTGGTGATCACGGACAGTCATCATTTTCTGGAACGGATTATATCCCACAATTTGATGGGGATAAATTTACGGGAAATGATAGCACTTGTTTCAATGGCCTGAAAGCACATGGCATGGCATCTTGGGACAGTGTCTTGCAACATGCTGCCGAGTTGCACACTGATCCATCTCTTGTGTCATTTCCTTCTATCCCATCTGGTTCAATGGGAAACATGCTTGACCAAGAACATAACATTTTGGGTGACCTTTTAATGAGCAAAAGTGGCCTCACTGATGGAGCAGGGACCTCTCAGTCTCTACAATCACATTGGCAGATTCCTTTTGAAGGAAATGCAGGACACATGCCGACCTTAACCCAATCATTGAGTTTGGATTTTGGATCTGATTTTGACACTAGTTTACTTGGGAATGAAGCTCATAATGGAAGTTCTGAAGTTTCTCCTGTCCTGTTTAGTTTTCATGGTGAGCCAAAAGACCAGCTTGTGCAGCAAAACTATCCTGAACAGCATGTAGATGAACAATTACAACATGTACTAAAGCCCAATTCTGCAAATAAAGTTCCTGGTGAAGAAACTATCAACTATCCCTTAACTATGAGACGTACATTATTGGATAGTGAGGAGAGCCTGAAGAAGGTTGATAGCTTCTCTCGGTGGATTACTAAAGAACTTGCAGAGGTGGATGATTTGAATTTGCAGTCCTCACCTGGCATTTCCTGGAGTACAGATGAATGTGGGCATGTGATAGATGATAGCTCATTAAGCCCATCTCTCTCACAGGACCAACTGTTTAGCATAAATGATTTCTCACCTAAATGGGTTTGTGCTGAGTCAGAAACTGAGATATCAACTACTCTTGTCCTGGTGTTGATCATTGGATCATTTTTGAAGAGTCAACCAGAGGTGACAACCTGTAACTGGTCCTGTATGTTTGGGGAAGTTGAGGTTCCTGCTGAGATTTTAGCTAATGGAATTCTGTGCTGTCAAGCTCCACCTCATAAGGTTGGACGGGTCCCTTTCTATGTAACATGTTCAAATAGGTTAGCTTGTAGTGAAGTGCGGGAATTCGATTACAGAGAGGGCTTTTCTAGAAATGTAGATTTTGCAGATTTTTTCAACAGTTCAACCGATATGCTGCTTCATTTGCGACTGGAGGAGTTTCTTTCTTTAATGCCAGTGCACCCTTCTGAACAAACCTTTGAGGGTGATATGGAGAAAAGAAAAAAAATTTTGAAGCTTATTTCACTGAGAGAGGAAGAGGAATATTCAAGTAAGGAAGAGCTGACCATCGAGACAGATATATCACAACACAAGATGAAGGAACATCTGTTTCATACGCAGGTTAAAGAAAAGCTGTACTCATGGCTTCTTCATAAAGTAACTGAGAGTGGCAAAGGGCCAAATGTGTTAGATAAGGATGGGCAGGGTGCGCTACATTTGGTAGCTGTTCTTGGTTATGATTGGGCCATAAGCCCAATTTTAATTTCTGGAGTCAATATTAACTTCCGTGACGTGAATGGATGGACAGCTTTACATTGGGCTGCATCCTGTGGCAGAGAGCGGACAGTTGCCGTCCTTGTCTCCATGGGTGCAGATTGTGGGGCATTGACGGACCCATCTCCAGCATTTCCTTCAGGTAGAACAGCTGCAGATCTTGCCTCTAGCAACGGGCACAAAGGAATCTCTGGTTTTCTTGCCGAGTCTTCATTAACTAGCCACCTTGAATCTCTCACAATGGATGATCAACATAAAGGTGGCCGGCAAGAAATTTCGGGAATGAAGGTGGTGCAGACAGTCTCAGAACGAAGTGCAACACCTGTGCTCTATAGTGATATGCCAGATGCCCTCTGCCTTAAGGATTCTCTTACTGCTGTCCGTAATGCTACACAAGCTGCTGATCGTATACATCAAGTATTCAGAATGCAGTCATTTCAGAGGAAGCAGTTAACTCAGTATGAAGATGAGTTTGGATTGTCAGATCAGCGAGCTCTTTCCCTTCTAGCCTCTAAGGCATGCAAATCTGGACAAGGAGATGGTTTAGTCAATGCTGCTGCCATACAAATACAGAAAAAGTTTCGTGGTTGGAAGAAGAGAAAAGAATTCTTGATCATTCGTCAAAGAATTGTTAAAATTCAGGCCCATGTAAGAGGTCACCAGGTAAGGAAGCAGTATAAAACAATCATCTGGTCTGTGGGAATCCTGGAGAAGGTCATATTACGCTGGAGACGCAAGGGTAGTGGTCTACGCGGGTTTCGACAAGATGCCCTTAATAAAGTACCCGTCCAACAAAATGATTCACAGAAAGAGGATGATTATGATTATCTTAAGGAAGGACGGAAACAAAAAGAGGAAAAGATCCAAAAGGCCCTTTCTAGGGTTAAGTCCATGGTTCAGTATCCAGAGGCACGGGCTCAATACCGGCGTTTACTAAATGTTGTTGAAGACTTCCGTCAAACGAAGGCTTGTGATATGAGTTTGATCAATTCTGAAGAGACAGTAGATGGTGTGGAGGATTTGATTGATATTGATATGCTCTTAGATGATGATAATTTCATTCCTATAGCATTTGATTGA 3033 0.4227 MLWLDMEVLPSLGGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEPDMMHIVFVHYLEVKGNKSNIGGNADSDEAISDSQKVNSPSSGLPTSYSSVPSLSTDSVSPTTSLTSLREDADSGDHGQSSFSGTDYIPQFDGDKFTGNDSTCFNGLKAHGMASWDSVLQHAAELHTDPSLVSFPSIPSGSMGNMLDQEHNILGDLLMSKSGLTDGAGTSQSLQSHWQIPFEGNAGHMPTLTQSLSLDFGSDFDTSLLGNEAHNGSSEVSPVLFSFHGEPKDQLVQQNYPEQHVDEQLQHVLKPNSANKVPGEETINYPLTMRRTLLDSEESLKKVDSFSRWITKELAEVDDLNLQSSPGISWSTDECGHVIDDSSLSPSLSQDQLFSINDFSPKWVCAESETEISTTLVLVLIIGSFLKSQPEVTTCNWSCMFGEVEVPAEILANGILCCQAPPHKVGRVPFYVTCSNRLACSEVREFDYREGFSRNVDFADFFNSSTDMLLHLRLEEFLSLMPVHPSEQTFEGDMEKRKKILKLISLREEEEYSSKEELTIETDISQHKMKEHLFHTQVKEKLYSWLLHKVTESGKGPNVLDKDGQGALHLVAVLGYDWAISPILISGVNINFRDVNGWTALHWAASCGRERTVAVLVSMGADCGALTDPSPAFPSGRTAADLASSNGHKGISGFLAESSLTSHLESLTMDDQHKGGRQEISGMKVVQTVSERSATPVLYSDMPDALCLKDSLTAVRNATQAADRIHQVFRMQSFQRKQLTQYEDEFGLSDQRALSLLASKACKSGQGDGLVNAAAIQIQKKFRGWKKRKEFLIIRQRIVKIQAHVRGHQVRKQYKTIIWSVGILEKVILRWRRKGSGLRGFRQDALNKVPVQQNDSQKEDDYDYLKEGRKQKEEKIQKALSRVKSMVQYPEARAQYRRLLNVVEDFRQTKACDMSLINSEETVDGVEDLIDIDMLLDDDNFIPIAFD 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi31g00175 1010 ProSiteProfiles CG-1 DNA-binding domain profile. 1 100 IPR005559 GO:0003677
Sebi31g00175 1010 Gene3D - 834 881 - -
Sebi31g00175 1010 SMART CG_1_2 6 95 IPR005559 GO:0003677
Sebi31g00175 1010 ProSiteProfiles IQ motif profile. 857 881 IPR000048 GO:0005515
Sebi31g00175 1010 FunFam Calmodulin-binding transcription activator 2 412 515 - -
Sebi31g00175 1010 Pfam CG-1 domain 13 93 IPR005559 GO:0003677
Sebi31g00175 1010 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 833 884 IPR027417 -
Sebi31g00175 1010 FunFam Calmodulin-binding transcription activator 2 833 881 - -
Sebi31g00175 1010 ProSiteProfiles IQ motif profile. 835 863 IPR000048 GO:0005515
Sebi31g00175 1010 SMART ANK_2a 659 688 IPR002110 GO:0005515
Sebi31g00175 1010 SMART ANK_2a 698 727 IPR002110 GO:0005515
Sebi31g00175 1010 Gene3D Immunoglobulins 412 514 IPR013783 -
Sebi31g00175 1010 ProSiteProfiles Ankyrin repeat region circular profile. 659 685 - -
Sebi31g00175 1010 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 972 - -
Sebi31g00175 1010 ProSiteProfiles Ankyrin repeat profile. 659 691 IPR002110 GO:0005515
Sebi31g00175 1010 MobiDBLite consensus disorder prediction 103 166 - -
Sebi31g00175 1010 SUPERFAMILY E set domains 419 512 IPR014756 -
Sebi31g00175 1010 MobiDBLite consensus disorder prediction 103 149 - -
Sebi31g00175 1010 SUPERFAMILY Ankyrin repeat 610 720 IPR036770 -
Sebi31g00175 1010 Pfam IQ calmodulin-binding motif 836 854 IPR000048 GO:0005515
Sebi31g00175 1010 Pfam IQ calmodulin-binding motif 859 878 IPR000048 GO:0005515
Sebi31g00175 1010 SMART iq_5 833 855 IPR000048 GO:0005515
Sebi31g00175 1010 SMART iq_5 856 878 IPR000048 GO:0005515
Sebi31g00175 1010 Pfam Ankyrin repeats (3 copies) 606 687 IPR002110 GO:0005515
Sebi31g00175 1010 Gene3D - 585 729 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi31g00175 Sebi-Chr31 1919499 1926947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi31g00175 14 991 CAMTA Transcription Factor Family AT5G64220 52.004 0.0 974
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Sebi31g00175 Ank_2 1.4e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi31g00175 K21596 - gmx:100818124 1556.96