Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi31g00161 ATGGAAAACGACGATGTCGACATGCAGGCAGCAGAGACCAACGAAGTAGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTGCTTTGCGAGAGATGCAGGCCAAGGTCGAGAAGGAGATGGGATCAGTGCAAGATCCTGCATCTGCTTCTGCAAGTCAGGCCAATAGAGAGGAAATAGATTCTCGATCAGTCTTTGTAGGCAATGTGGACTATTCATGCACTCCTGAAGAGGTGCAGCAGCATTTTCAGTCATGTGGAACAGTAAACAGAGTGACCATTCGGACTGATAAGTTTGGCCAACCCAAGGGTTATGCTTATGTAGAGTTCCTTGAGACAGAGGCTGTTCAAGAGGCCCTTTTGCTGAATGAATCTGAACTTCATGGGCGCCAATTGAAGGTAACAGCTAAGAGGACCAACATACCAGGGATGAAGCAGTATCGTCCCCGCCGAGCAGCCAATCCTTACATGGGGTTTCGAGGCAGAACCCCATATGCACCTCCTTTTGCTTATTCACCATATGGATATGGGTATATTACACTCGGAAAGTTCCAAGGTTCAGAATGCCAACGCGCTACAGCCCCTACTATTGATTGTCCAATTCTGGTTGGATGGACAGAATGGCATCCTTCTCTCCCTTGTATTATCATGGTCGGAGTTTTGGCCATTAAACATGAGGGAATTTCTGACCACCCAGATTGA 717 0.4728 MENDDVDMQAAETNEVELDDMKKRLKEMEDEAAALREMQAKVEKEMGSVQDPASASASQANREEIDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLETEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRAANPYMGFRGRTPYAPPFAYSPYGYGYITLGKFQGSECQRATAPTIDCPILVGWTEWHPSLPCIIMVGVLAIKHEGISDHPD 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi31g00161 238 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 144 IPR000504 GO:0003723
Sebi31g00161 238 MobiDBLite consensus disorder prediction 43 64 - -
Sebi31g00161 238 SMART rrm1_1 69 140 IPR000504 GO:0003723
Sebi31g00161 238 CDD RRM_II_PABPs 69 140 - -
Sebi31g00161 238 Gene3D - 3 141 IPR012677 -
Sebi31g00161 238 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 15 154 - -
Sebi31g00161 238 SUPERFAMILY RNA-binding domain, RBD 56 168 IPR035979 GO:0003676
Sebi31g00161 238 Coils Coil 8 45 - -
Sebi31g00161 238 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 138 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi31g00161 Sebi-Chr31 1793477 1797999 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi31g00161 69 139 Eukaryotic Initiation Factors Gene Family AT2G36660 31.944 2.27e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi31g00161 K14396 - gmx:100791351 341.658