LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi31g00158	ATGGAGATGGAGGATCCAGCCAGCTGGAAGAAGCCAATGGCAAGCTATCTCGTACGCTACCATTCCGATCAGCTCCGCTCCATCGCTTCTTCTCCCGATTCCAACCTTCATTTCCCTCTTTACGTCGATTTCGCAGAGTTGATGGAGGATGATCCTCGCACTGCTCGTCTCCTCTTTGCCCAACCCAACACCTACTTGCAAGTGTTCGATGATGCTGCTCTTTGGGCTCATAAAATCATATTGGAAGATATGGCGGATGACAAGAAAGGGATTGAGAAGAAATTCATTCATGTTCGCATTAACGTCAGTGGCTCGCCACTTGAATGCCCTGAGACCTTTCCAAGCATAGGACGTGTTCGAGTGCAGCACCGTGGAATCCTTCTCACTCTCAAAGGGATAGTGATCAGGTCCGGTGCAATCAAGATGCATGAAGGAGAGAGGAAGTACATGTGCCAGAAATGCAAAAACAGCTTCACAGTTTATCCTGAGGTGGAAGCTCGAAACTCCATATCATTACCTTCAATTTGCCCAATTCAGAAGTCTAAACCCTGTGGAGGCACAAAATTCCAGTATGTAGAAAATACTATAGTATGCCATGATTATCAGGAGATAAAAATCCAAGAAAGTACACAGGTGCTAGGTGTCGGGGCGATTCCTCGTTCAATTCTTGTCATCTTGAAGGATGACCTTGTTGATGTTGTTAAAGCTGGAGATGATGTAATTGTCACTGGTCTCTTAACAGCAAAATGGTCTCCAGAGTTGAAGGATGTGCGATGTGACCTTGATCCTGTATTAATAGCCAACAATGTAAGGAGAATTAATGAACTGAAGTCAGAAATTGATATTTCTGATGATATTGTTATGAAATTCAAGCAGTTCTGGGTTCACTTCAAAGATGCACCTTTAAAAGGGAGGAATGCTATTCTACGAGGAATTTGCCCACAAATATTTGGTCTTTTCACTGTCAAGCTGGCTGTTGCATTAACACTTATTGGAGGTGTGCAACATGTCGATGCTTCTGGAACAAGGGTAAGAGGGGAGTCCCACTTACTCTTGGTTGGTGATCCTGGCACTGGAAAATCTCAGTTTCTGAAATTTGCTGCAAAATTGAGCAACCGATCTGTTATTACCACTGGGTTGGGAAGCACAAGTGCAGGATTGACTGTTACTGCAGTGAAGGATGGAGGTGAGTGGATGTTGGAAGCTGGGGCCCTTGTCTTGGCCGATGGAGGATTGTGTTGCATAGATGAATTTGATAGTATGAGGGAACATGACAGAGCAACAATACATGAAGCCATGGAACAGCAGACAATAAGTGTTGCCAAGGCCGGTCTTGTAACAACACTCAGTACTAGAACAACAGTATTTGGGGCCACAAATCCTAAGGGACAATATGATCCTGATCAACCTCTGTCTGTCAATACGACACTTTCTGGTCCTTTATTAAGCAGGTTTGATATTGTTCTAGTTCTCTTAGATACAAAGAATCCTGAATGGGATGCAGTGGTTTCATCTCATATTCTTTCTGAGGCAGAACCGGATAGAACCAACAATGATGAAGATCTAGCAAATATCTGGCCTCTTTCTACACTCAAGAGGTATATACACTATGTGAAAGAAACTTTCAGACCAGTCCTTTCGAGAGAGGCTGAAATAGTTATATCCAGCTATTATCAACTTCAAAGGAAATCTGCAACTCATAATGCAGCTAGGACAACTGTCCGCATGCTGGAAAGTCTGATACGCCTAGCTCAAGCTCATGCTAGGCTGATGTTCAGAAATGAGGTCACTCGACTAGATGCCATCACAGCTATTTTATGCATAGAATCCTCCATGACAACCTCAGCTATTGTGGATTGCATTGGGAATGCTCTGCATTCCAATTTTACTGACAACCCTGATCAGGAATGTATCCTTGCTAAGTAA	1926	0.4346	MEMEDPASWKKPMASYLVRYHSDQLRSIASSPDSNLHFPLYVDFAELMEDDPRTARLLFAQPNTYLQVFDDAALWAHKIILEDMADDKKGIEKKFIHVRINVSGSPLECPETFPSIGRVRVQHRGILLTLKGIVIRSGAIKMHEGERKYMCQKCKNSFTVYPEVEARNSISLPSICPIQKSKPCGGTKFQYVENTIVCHDYQEIKIQESTQVLGVGAIPRSILVILKDDLVDVVKAGDDVIVTGLLTAKWSPELKDVRCDLDPVLIANNVRRINELKSEIDISDDIVMKFKQFWVHFKDAPLKGRNAILRGICPQIFGLFTVKLAVALTLIGGVQHVDASGTRVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTTVFGATNPKGQYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILSEAEPDRTNNDEDLANIWPLSTLKRYIHYVKETFRPVLSREAEIVISSYYQLQRKSATHNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDCIGNALHSNFTDNPDQECILAK	641

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi31g00158	641	ProSiteProfiles	MCM family domain profile.	304	507	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Sebi31g00158	641	SUPERFAMILY	Nucleic acid-binding proteins	37	254	IPR012340	-
	Sebi31g00158	641	SMART	AAA_5	346	495	IPR003593	GO:0016887
	Sebi31g00158	641	Pfam	MCM P-loop domain	306	509	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Sebi31g00158	641	SMART	mcm	112	613	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Sebi31g00158	641	Pfam	MCM OB domain	119	247	IPR033762	-
	Sebi31g00158	641	CDD	MCM9	307	611	-	-
	Sebi31g00158	641	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	345	360	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Sebi31g00158	641	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	403	417	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Sebi31g00158	641	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	431	444	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Sebi31g00158	641	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	481	489	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Sebi31g00158	641	Gene3D	-	279	617	IPR027417	-
	Sebi31g00158	641	Pfam	MCM AAA-lid domain	530	611	IPR041562	-
	Sebi31g00158	641	PANTHER	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	39	617	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Sebi31g00158	641	Gene3D	-	143	199	-	-
	Sebi31g00158	641	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	314	621	IPR027417	-
	Sebi31g00158	641	FunFam	Probable DNA helicase MCM9	282	616	-	-
	Sebi31g00158	641	Gene3D	-	119	247	IPR012340	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi31g00158	Sebi-Chr31	1771797	1779698	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi31g00158	3	641	Core DNA Replication Machinery Family	AT2G14050	76.124	0.0	1024

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi31g00158	K10738		-	gmx:100776255	1159.44