Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi31g00152 ATGCTTGGTTTCTCTCCCTTCTTCCCCAACCCCATCTCTAATTATGGGGCGGCATCACAGGAAGTTGATGTCAGAATCTGTGAGGTGATCTGTCATGTGAAGGAGCCTGGTTCATGTTCATCAGACTGCAAAATTTGCCTCAAGATCTGCCTAACTAATCCCCAATACTATCCTTATTATTCTCCTCCACCACCACCGCCTCAACCACAAGTTCCTTCTTTTTACTCAGATAAAGATGAATATCAAGGAAACAACCACAAAATCTCCACCTATTTGATCCTAGCTCTTGCTCTTCTAGCTGCTGCTTTCTTTGTTGTTTGCTGCCGTGCCATCTATACCAGGCTTGGCTCAAGGAGGAGGGAATCACCAACGGAACAAACACAAGAGACCCGTGAAGATTTTCTTGATGAAGAACATGGCCCTATGGTGGACCACCCCATTTGGTATATCCGCACCCCTGGTCTCCACCAATCGATTATCAACGCCATAACAGTTTGTAAGTATAAGAAAGGTGAGGGCTTGATTGAAGGAACAGAGTGTGTTGTTTGCTTGAGTGAGTTTCAAGAAGATGAGAATCTTAGACTTTTGCCAAAGTGTCATCATGCTTTTCATTTACCTTGTATTGATACTTGGCTTAGATCTCATACCAATTGTCCCATGTGCCGGGCTCCCATTGTGACCAACCCTGCAACTGCAAGGATTCCATCTCTGGAACATACCATTACCAATCTTGTTGATTCAAGTTCTTTGGAACATACCCAGATGGAAATTTTGGAAAATAGCAGTGGAAACAGTGAAGGATTGGAAAATGGTGATTCTGATTCTGAATTGAGGAACAGGGCAGAGGAAGAAGGGCAATTGGAAGTTGAAGATGGGACTGAAACTGAAGGCTCAGCTGCAGAGGTGGTAAATATTAGGCCTAGGAGATCTGTTTCTCTTGATTCTTCTTCGGTTGCAAATATCAATCTTGCTCTTGCAACATTTGTATCAATGGAATCTAATGGTAATTCAAATAGAGTGCTGGGGGGTGTCAATGTCATTGAACCTAGTGTTTCAAAGAGGGTTACTGGAAACGAGAATTTGGCTACTACATCTTCAAAAGGTAGCTCTTCTTTCAGGTTAACAAGATATCTGCAGGGTGTTCCTAGCCCAATGAAGAGGTCATATTCCTACAATGGGAAGTACCTTCTGTCCTCCTGGTATAGCCGCAGTCAGAAGAAGCAAAATGCTATTCTGAGAAGCTTTTAA 1248 0.4303 MLGFSPFFPNPISNYGAASQEVDVRICEVICHVKEPGSCSSDCKICLKICLTNPQYYPYYSPPPPPPQPQVPSFYSDKDEYQGNNHKISTYLILALALLAAAFFVVCCRAIYTRLGSRRRESPTEQTQETREDFLDEEHGPMVDHPIWYIRTPGLHQSIINAITVCKYKKGEGLIEGTECVVCLSEFQEDENLRLLPKCHHAFHLPCIDTWLRSHTNCPMCRAPIVTNPATARIPSLEHTITNLVDSSSLEHTQMEILENSSGNSEGLENGDSDSELRNRAEEEGQLEVEDGTETEGSAAEVVNIRPRRSVSLDSSSVANINLALATFVSMESNGNSNRVLGGVNVIEPSVSKRVTGNENLATTSSKGSSSFRLTRYLQGVPSPMKRSYSYNGKYLLSSWYSRSQKKQNAILRSF 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi31g00152 415 MobiDBLite consensus disorder prediction 258 299 - -
Sebi31g00152 415 CDD RING-H2_EL5-like 179 222 - -
Sebi31g00152 415 SUPERFAMILY RING/U-box 174 232 - -
Sebi31g00152 415 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 80 230 IPR044675 -
Sebi31g00152 415 MobiDBLite consensus disorder prediction 271 286 - -
Sebi31g00152 415 Pfam Ring finger domain 179 222 IPR001841 -
Sebi31g00152 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 229 IPR013083 -
Sebi31g00152 415 ProSiteProfiles Zinc finger RING-type profile. 180 222 IPR001841 -
Sebi31g00152 415 SMART ring_2 180 221 IPR001841 -
Sebi31g00152 415 FunFam RING-H2 finger protein ATL54 155 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi31g00152 Sebi-Chr31 1732057 1733304 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi31g00152 88 229 C3H Transcription Factor Family AT1G72220 52.703 2.84e-45 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi31g00152 - - gmx:100804758 463.766