Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi31g00111 ATGGAGATTTCATCAGTCCGGGGGTTACCTGAACAGGGGATAATAGAGGATCCTAATTTTCTCCATCAGTGGCACTTAAGTTCTATTGATACCACTAGCTTAACAGCTGCTGCTTTTGGAGAGGCTTTACAAAAACATTCATTCTCTAATAGCACAAACTTCAACACCAAAACCTCCTTGGAAACTTCACTCACTGGAATGGAAAGACCCACAAAACAGCTCAAAAACAACAGCTGGAACCACAACAAAAGCCCTCAGACAACAACAGATACACAACTTGCTTCTTGCTCAAATCTTCTTTCATTTGTTGATTCGAATTACACTAGTCAATGGGGACTAATGAAGCCAAAGGTAGAGATGGTGTGTCCTAAAATGGATAACACTACCCTTGCAAACATGTTGATCTCTCAAGGAAACTTGGTGAATGAAAACTATGTCTTCAAAACTTCTTGCCAAGAGGCCAAAAAGATTGTGACACATCCTAAACTTTCTCAACCTCAAGACCACGTAATAGCTGAAAGGAAGCGGCGAGAGAAGCTCAGCCAGCGGTTCATTGCTCTATCTGCTCTTGTTCCGGGCCTAAAAAAGATGGACAAAGCTTCTGTTCTTGGAGAGGCTATCAAGTACTTGAAGCAAATGCAAGAGAAAGTGAGTGCTCTTGAGGAGGAACAGAACAGGATGAAAACTGTGGAATCTGTGGTAATTGTGAAAAAATCTCAACTATCTAATGATGGTGAAGACTCTTCTTCAGGTACATTTGACGAGACACTGCCTGAAATTGAAGCAAGATTTTGTGAAACAAATGTGCTCATAAGACTACACTGTCTGAAGCATAAAGGAGTTATAGAGAAAACAATCAGCGAAATTGAGAAACTCCATCTAAAAGTCATCAATAGCAATGCCATGACATTTGGGAGTTTCGCCCTTGATATAACCATTATTGCTCAGATGGATGTGGGATTTTGCATGACAACAAAGGATCTTGTGAGAAACCTACGTGCAGCTTTTTCATCTTTCATATGA 1023 0.4047 MEISSVRGLPEQGIIEDPNFLHQWHLSSIDTTSLTAAAFGEALQKHSFSNSTNFNTKTSLETSLTGMERPTKQLKNNSWNHNKSPQTTTDTQLASCSNLLSFVDSNYTSQWGLMKPKVEMVCPKMDNTTLANMLISQGNLVNENYVFKTSCQEAKKIVTHPKLSQPQDHVIAERKRREKLSQRFIALSALVPGLKKMDKASVLGEAIKYLKQMQEKVSALEEEQNRMKTVESVVIVKKSQLSNDGEDSSSGTFDETLPEIEARFCETNVLIRLHCLKHKGVIEKTISEIEKLHLKVINSNAMTFGSFALDITIIAQMDVGFCMTTKDLVRNLRAAFSSFI 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi31g00111 340 CDD bHLH_AtNAI1_like 167 239 - -
Sebi31g00111 340 Pfam Helix-loop-helix DNA-binding domain 167 214 IPR011598 GO:0046983
Sebi31g00111 340 Coils Coil 203 230 - -
Sebi31g00111 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 241 IPR036638 GO:0046983
Sebi31g00111 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 213 IPR011598 GO:0046983
Sebi31g00111 340 PANTHER BHLH TRANSCRIPTION FACTOR 39 337 - -
Sebi31g00111 340 Gene3D - 164 235 IPR036638 GO:0046983
Sebi31g00111 340 SMART finulus 170 219 IPR011598 GO:0046983
Sebi31g00111 340 MobiDBLite consensus disorder prediction 61 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi31g00111 Sebi-Chr31 1124521 1126812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi31g00111 1 340 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 37.960 8.00e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi31g00111 HLH 2.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi31g00111 - - gmx:100798018 544.273