Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi31g00108 ATGTTCGCCGGAGGAATTTTCCGTCATGGGTTGTTGCCTATTATTCTCACTGCTCTGTTTTTCCTCTGCCTCGTTACTACCTCTCAATCAGATGAGCTTCAATCACTCATGCAGTTTAAGTCCTCTATCCAAAGTTCAGATGCAAATGTTTTCAGTTCTTGGACACAAACAAATTCTCCCTGCCAATTCACTGGGATTGTCTGCAATTCCAATGGTTTTGTTTCAGAAATCAATCTTGCACGGAAAAAGCTAGTGGGTACCCTTCCTTTTGATTCAATTTGCGAGCTTGAATCACTTGAGAAGATCTCTTTGGAGTCCAACTTCTTGCATGGCAGCATCAGTGAAGGGTTGAGGAATTGCAAAAACTTGCAGTACTTGGATTTGGGTGGGAATCAATTCACTGGGACAGTGCCTGACTTGTCAACTCTGAACAAGTTGAAGTATTTGAATTTAAATGATAGTGGAATTTCTGGGGCATTTCCATGGAAATCATTGGAAAATTTAACTAGTCTCACATTCTTGAGCCTTGGGGACAACCTATTGGAAAAAACTCCTTTCCCTTTGGAGGTCTTAAAGCTTAACAAATTGTATTGGCTTTACCTCTCAAATTGCAGCATCACAGGGAAAATCCCAGTGGGTATTGGAAATCTCACTCAGCTTCAGAATCTTGAGCTTGCTGACAATCAATTGTCTGGTGAGATTCCAGCTGAAATTGGAAAGCTTCAGAAGCTGAGGCAACTTGAGCTATATGACAACTACTTGAGTGGGGAAATCCCTGTTGGATTTGGCAACCTTACCAATCTTGTTAACTTTGATGCTTCTAATAATCAGCTTGAAGGTGGTCTTTCTGAGCTAAGGTCCTTGACAAACCTTGCATCCCTGCAGCTTTTTCAGAACCAATTATCAGGAACAATTCCAGAAGAGCTTGGTGATCTTAAAAACCTCACAGACCTTTCTCTTTACAGTAACAAGCTCACTGGTCATCTTCCTCAAAAGCTTGGCTCATGGGTAGGCATGCAATTCATTGATGTTTCAGACAATTTGCTTTCTGGTCCTATTCCACCTGACATGTGCAAGAACAACCAAATCACAGACATAGCACTGTTAAACAACAGCTTCACTGGAAGCATACCAGAAACATATGCAAAGTGCACATCTTTGGCTCGTTTCAGCGTAAATAAGAATTCACTCTCAGGTGTTGTTCCTTCAGGTATATGGGGCTTGCCAAATCTGGAGCTAATCGATCTTAGAATGAACCAGTTTGAAGGTCTAATATCATCTGATATTGGCAAAGCAAAATCTCTTGCACAACTGTTTTTATCTGACAATAAGTTCTCAGGTGAGTTACCACTGGAAATCTCAGAAGCTTCTTCATTGGTATTAATTCAGCTAAGTTCAAATCAAATTTCTGGTCACATACCAGAAACGATTGGCAAGTTGAAGAAACTAACTAGTCTTACTTTGAATAACAACAATGTTTCTGGTATCATACCAGATTCTATTGGTTCTTGTGTTTCTCTTAATCAAATAAACCTTGCTGGTAACTCTCTTTCTGGGGTAATACCAGCTAGCATTGGGTCTTTGCCAACCCTCAATTCATTGAACTTGTCCTCAAACCAGCTTTCTGGTGAAATCCCATCAAGTTTATCATCCCTCAAACTTAGCATTCTTGATTTATCAGACAACCAGTTGTTTGGATCCATACCAGAATCACTGGCTATTTCAGCTTTCAAAGATGGGTTCATGGGAAATCCTGGCTTATGCAGCCAGACTTTGAAAAATTTCCAACCTTGTTCAGTGGAATCAGGAAACTCCAGGAGACTCAGAAACTTTTTACTCCTTTTCATTGCTGGTTTAATAGTCCTGTTTGTTTCATCAGCATATTTCATATTCCTGAAACTGAAACAGAACAAGTTTGAGAAGCCACTGAAGAGTAATTCTTGGGATGTCAAGCAGTACCACGTGCTGAACTTCAATGAGAGCGAAATCATTGATGGGATCAAGGCTGAGAATTTGATTGGAAAAGGAGGATCAGGGAATGTTTACAAGGTTATGCTTAAAAGTGGGGGAGAATTTGCAGTGAAACACATATGGACTTCAAATCCAAGTGATAGGGGAAATTGCAGGAGCAACTCAGCTATGCCTATGCTAAAAGGAGTTCCAGGTGGAGCAGGCAATTGGACTAATGTCATAGCTGGAACACTTGGCTACATGGCTCCTGAATATGCCTACACTTGTAAGGTGACAGAGAAGAGCGATGTTTACAGCTTTGGGGTAGTGCTGATGGAGTTGGTAACGGGGAAGAGGCCTATGGAGCCAGAGTTTGGAGAGAATAAGGACATTGTGTATTGGGTTTGCAGCAATATTAGGAGCAAAGAAGATGCGCTTCAATTAGTGGATTCTACCATTGCGAAGCATTTTAAAGAAGATGCCTTGAAGGTGTTGAGAATTGCAACATTATGCACAGCGAAAATTCCAGCTGCAAGACCATCAATGAGAATGTTGGTTCAAATGTTGGAAGAGGCAGAGCCTTGTGCTTCACCCAAAGTGATTGTGAACATAGATAATTAA 2571 0.4084 MFAGGIFRHGLLPIILTALFFLCLVTTSQSDELQSLMQFKSSIQSSDANVFSSWTQTNSPCQFTGIVCNSNGFVSEINLARKKLVGTLPFDSICELESLEKISLESNFLHGSISEGLRNCKNLQYLDLGGNQFTGTVPDLSTLNKLKYLNLNDSGISGAFPWKSLENLTSLTFLSLGDNLLEKTPFPLEVLKLNKLYWLYLSNCSITGKIPVGIGNLTQLQNLELADNQLSGEIPAEIGKLQKLRQLELYDNYLSGEIPVGFGNLTNLVNFDASNNQLEGGLSELRSLTNLASLQLFQNQLSGTIPEELGDLKNLTDLSLYSNKLTGHLPQKLGSWVGMQFIDVSDNLLSGPIPPDMCKNNQITDIALLNNSFTGSIPETYAKCTSLARFSVNKNSLSGVVPSGIWGLPNLELIDLRMNQFEGLISSDIGKAKSLAQLFLSDNKFSGELPLEISEASSLVLIQLSSNQISGHIPETIGKLKKLTSLTLNNNNVSGIIPDSIGSCVSLNQINLAGNSLSGVIPASIGSLPTLNSLNLSSNQLSGEIPSSLSSLKLSILDLSDNQLFGSIPESLAISAFKDGFMGNPGLCSQTLKNFQPCSVESGNSRRLRNFLLLFIAGLIVLFVSSAYFIFLKLKQNKFEKPLKSNSWDVKQYHVLNFNESEIIDGIKAENLIGKGGSGNVYKVMLKSGGEFAVKHIWTSNPSDRGNCRSNSAMPMLKGVPGGAGNWTNVIAGTLGYMAPEYAYTCKVTEKSDVYSFGVVLMELVTGKRPMEPEFGENKDIVYWVCSNIRSKEDALQLVDSTIAKHFKEDALKVLRIATLCTAKIPAARPSMRMLVQMLEEAEPCASPKVIVNIDN 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi31g00108 856 Gene3D Transferase(Phosphotransferase) domain 1 715 850 - -
Sebi31g00108 856 FunFam Leucine-rich receptor-like protein kinase family protein 188 284 - -
Sebi31g00108 856 SUPERFAMILY Protein kinase-like (PK-like) 663 843 IPR011009 -
Sebi31g00108 856 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Sebi31g00108 856 Gene3D Ribonuclease Inhibitor 358 473 IPR032675 -
Sebi31g00108 856 ProSiteProfiles Protein kinase domain profile. 534 850 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi31g00108 856 SUPERFAMILY L domain-like 193 562 - -
Sebi31g00108 856 SMART LRR_typ_2 408 431 IPR003591 -
Sebi31g00108 856 SMART LRR_typ_2 480 504 IPR003591 -
Sebi31g00108 856 SMART LRR_typ_2 168 193 IPR003591 -
Sebi31g00108 856 SMART LRR_typ_2 288 311 IPR003591 -
Sebi31g00108 856 SMART LRR_typ_2 96 120 IPR003591 -
Sebi31g00108 856 SMART LRR_typ_2 528 552 IPR003591 -
Sebi31g00108 856 SMART LRR_typ_2 217 241 IPR003591 -
Sebi31g00108 856 SMART LRR_typ_2 312 336 IPR003591 -
Sebi31g00108 856 Gene3D Phosphorylase Kinase; domain 1 650 714 - -
Sebi31g00108 856 SUPERFAMILY L domain-like 30 279 - -
Sebi31g00108 856 Pfam Leucine rich repeat 458 517 IPR001611 GO:0005515
Sebi31g00108 856 SMART serkin_6 667 846 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi31g00108 856 Gene3D Ribonuclease Inhibitor 474 599 IPR032675 -
Sebi31g00108 856 Gene3D Ribonuclease Inhibitor 284 357 IPR032675 -
Sebi31g00108 856 ProSitePatterns Protein kinases ATP-binding region signature. 673 695 IPR017441 GO:0005524
Sebi31g00108 856 ProSiteProfiles Leucine-rich repeat profile. 122 144 IPR001611 GO:0005515
Sebi31g00108 856 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 727 839 - -
Sebi31g00108 856 Gene3D Ribonuclease Inhibitor 186 283 IPR032675 -
Sebi31g00108 856 Gene3D Ribonuclease Inhibitor 31 185 IPR032675 -
Sebi31g00108 856 FunFam Receptor-like protein kinase HSL1 290 596 - -
Sebi31g00108 856 SMART LRR_sd22_2 265 293 - -
Sebi31g00108 856 SMART LRR_sd22_2 120 142 - -
Sebi31g00108 856 SMART LRR_sd22_2 143 170 - -
Sebi31g00108 856 SMART LRR_sd22_2 551 570 - -
Sebi31g00108 856 SMART LRR_sd22_2 217 249 - -
Sebi31g00108 856 SMART LRR_sd22_2 312 346 - -
Sebi31g00108 856 SMART LRR_sd22_2 96 119 - -
Sebi31g00108 856 FunFam Probable inactive receptor kinase RLK902 29 187 - -
Sebi31g00108 856 Pfam Protein tyrosine and serine/threonine kinase 735 839 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi31g00108 Sebi-Chr31 1103890 1107015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi31g00108 723 853 Receptor kinase-like Gene Family AT1G09970 58.333 1.86e-45 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sebi31g00108 PK_Tyr_Ser-Thr 7.9e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi31g00108 - - gmx:100811489 1054.28