Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi31g00071 ATGGCAGAGGAGTTTCAAGCTGGTATTTGTGGTGAAACTTGGTGGAATATTAATCCAACAAGAAGTGTATTCCCTCTTATGAGCTCATCATCAACCTGTTCTGTGGCAGCTAATGATGCAGCCAACTATAGCACTTGGCAAACTGACTTTGTAGATTTGAAGGCAACAAGGTCTTGTGCTGAAGAGATTAATAATATCAATATGGTTTCTGATGGTTCTCTGGGTTTTGTTGATGCTCAGAAGGCACAGCAGAGTGAATCAGTTAGTGATGGAACTGGTGGTAGCATCTTGATGGATTCCACCTTACAAATTATGGGTTTTGGCCTGTCCTCCTCTTCAAATTCATCCAATTGGAATCAGTCTCTATTTGGAAGGCCAGAGAGCAATTTTCACTCTGTGCTTCAAGAAGAAACAGTTATAGATTCTTCCAATAATTCACAAATCCAAAAGGATTGGAGCCCAAAGAATTTCTCATCTGCAGGTGGAAGCCAAGTTTCCACAATTGATGGTTTCAAGCCAATGAACCAAGAATTTTCAGTAGACGAGCAGAGTCTGAATTGTGTAACAAGCAGCACTGGTGGATTCCCAAATTCCTATGGTTACCCTTCAACGTTAATATATGAGGCTGATCCTCAACCACAGAATTCACTTTTCACCAACCCCTCAGCTATGTCCTATTCATCCACTCCAACTGTGTATGGGACATCCTCCAATGAACTGTCACCAACTTGGTCTAAAGTCTCTACTTCCCTTATGAAACCCTCCATGCCAAAACAGCAGCTTAGTGGATTGCACTTTTCCAATAACACTCCTTTTTGGAATGCTTCAGCCGAGGCACTTCATGACATAAGAGCAGGAGTTTTTGCTTCTTCATCCCAGGGGCAATACCAAACACCAAATTTTGAAGAGAAAAAACTCAGTAGCCCAAGTAGTACTCTATTAAGCAAGCTGAAGAGAGAAGAGTCTCCAGACACGGGAAAGAAAAGTTGTTCTGAGCCTGCCCTTAAGAGGCCAAGAATTGAGACCCCATCTCCATTACCAACTTTTAAGGTTCGGAAAGAGAAACTGGGGGACCGAATCACTGCTCTTCAGCAATTGGTTTCACCTTTTGGAAAGACGGACACAGCATCCGTTCTCCACGAAGCCATCGAGTACATCAAGTTCCTTCATGATCAAGTCAATGTTTTGAGCACACCATATATGAAAAATGGAGCTCCCATTCAACAACACCAGGGTTGTGATAATGGGAAGGAGGCAGAAGGGGGAAAAGAAGATCTAAGAAGTCGAGGGCTGTGTTTGGTACCAATTTCAAGCACATTTCCGGTGACGAATGAGACCACTGTTGATTTCTGGACGCCAACATTCGGAGGCCCACTCATTGGCAGATAG 1389 0.4327 MAEEFQAGICGETWWNINPTRSVFPLMSSSSTCSVAANDAANYSTWQTDFVDLKATRSCAEEINNINMVSDGSLGFVDAQKAQQSESVSDGTGGSILMDSTLQIMGFGLSSSSNSSNWNQSLFGRPESNFHSVLQEETVIDSSNNSQIQKDWSPKNFSSAGGSQVSTIDGFKPMNQEFSVDEQSLNCVTSSTGGFPNSYGYPSTLIYEADPQPQNSLFTNPSAMSYSSTPTVYGTSSNELSPTWSKVSTSLMKPSMPKQQLSGLHFSNNTPFWNASAEALHDIRAGVFASSSQGQYQTPNFEEKKLSSPSSTLLSKLKREESPDTGKKSCSEPALKRPRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVNVLSTPYMKNGAPIQQHQGCDNGKEAEGGKEDLRSRGLCLVPISSTFPVTNETTVDFWTPTFGGPLIGR 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi31g00071 462 FunFam Transcription factor bHLH123 family 350 412 - -
Sebi31g00071 462 CDD bHLH_AtbHLH_like 346 397 IPR045239 -
Sebi31g00071 462 Gene3D - 350 410 IPR036638 GO:0046983
Sebi31g00071 462 MobiDBLite consensus disorder prediction 296 316 - -
Sebi31g00071 462 MobiDBLite consensus disorder prediction 296 346 - -
Sebi31g00071 462 MobiDBLite consensus disorder prediction 141 164 - -
Sebi31g00071 462 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 340 389 IPR011598 GO:0046983
Sebi31g00071 462 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 350 408 IPR036638 GO:0046983
Sebi31g00071 462 MobiDBLite consensus disorder prediction 317 335 - -
Sebi31g00071 462 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 143 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi31g00071 Sebi-Chr31 845927 850103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi31g00071 134 457 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 42.254 2.75e-58 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi31g00071 - - gmx:100794682 614.764