LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi31g00061	ATGGGTGGCCAACAGAGACCAACCACTACACGATCTTCCGGGATTGTCACCATATCTCACGACAAAAACCTTGTAGTACTGAATGGGACAAAACATGTTATTTGGTCATCAAATGTCTCAACTTTTGTTGCATCCAATTCCACTGCCCAACTTCTAGATACTGGGAACCTTGTATTGGTGGATGACACAACAGGCAAGACAATATGGGAGAGTTTCAAACATCCCTCTGATACATTCCTTCCAAATATGATAATTAGCACCAACCAAAAAACAGGGGAGAAAGTAAAAGCTACTTCATGGAAAAGTCCTTCTGATCCAGCCATTGGAAACTTCTCTGGCAGCCTTGACCGTCTCAGTGCTCCTGAAGTCTTTGTTTGGAAACAATCACAACCGTTCTGGCGCTCAGGTCCATGGAACGGTCAAGTCTTTATTGGTTTAGCCAGCAATTTGATGTATACTTCTGCATATCTGAATGGATTCAGCATAGGAAGGGGAGAGAATGACACTGTTGAGATAACTTACACTCTGCCAAATAACTCTTTCTTTGGAACCATTGTTGTGAGTCCAGAAGGCAAGCTGGTGTACACTGCCTGGATCAACAGGTTTCTAGTTGGTAAACGCGTATTTCAGGAAAATGATTGTGATGTTTATGGCTTTTGTGGGCCTTATGGAAGCTGTGATTCCAACAATTCACCAATCTGCACCTGTTTGAGAGGTTTTGAGCCGAGAAACGTGGATGAATGGAATAGACAAAACTGGACAAGTGGTTGTGTGAGAAAGGATGCACTGCAGTGTGAGAGGGTGAAAAATGGAAGTGAAGCTGGTGAAGGAGATGGATTTTTGAAACTGCAGATGACAAAAGTACCAGACTTTGCACAACAGTCATATCTTTCAGTTGATGCGTGTAGAACTGAGTGCCTCAAGAATTGTTCTTGTACAGCTTATGCATATGATGATGGCATTGGCTGTTTGAGTTGGAGTGGGAAGTTAATTGACATAGTGAGGTTCTCAAGTGGAGGAGTTGATCTTTACATACGCCAACCTCATTCAGAATTACTTGATGTAGATGGGAAAAGAAACGTTACAGCAATCATCATAGTTTCAGTGATAGTTGGAGCAGTTATTGTTGCTACCTGTACATATTTCTTATGGTCATGGACTTCTAAACGTACAGTGAGAAGAAAGGAAAGGCAAGGTTCGTTAGTGTTGAACACAGGGGAAACACATCTGGAAAACCGAAGTGTAGGTCTAATTGGAGATGTGAAACAAGTCAAAATTGAGGACCTTCCTTTATTTGATTTTAGAATCATTGCAACTTCAACAAATAACTTTGATTCAGCTAATAAGCTCGGCCAGGGACCAAGTCAAAAGAAGGTTTTAGATTGGCAAAAACGGTTAAACATAATTGAAGGAATCTCTAGAGGTCTTCTTTATCTCCATAGAGATTCCAGATTAAGAATAATCCATAGAGACCTGAAGCCAAGTAATATCTTGCTGGATGGAGAACTGAATCCAAAAATATCTGACTTTGGTATGGCAAGAATCTTTGGAGGCAGTGAAAATGAGGCCAACACTAGAAGGATTGTGGGAACATATGGGTACATGTCCCCTGAATATGCCATGGAAGGGCTGTTTTCAGAGAAATCTGATGTTTTTAGCTTTGGAGTTTTGCTTCTGGAGATAATTAGTGGTAGGAAAAACACAAGTTTCTATAAACACGAGCAGTCACTGAGCCTCTTAGGATATGCATGGAAACTATGGAATGAAGAGGAGATTGTATCTTTGATAGATCCAGATATATCTAATCCGGATTGTGTTGATCACATTTTGAGATGCATACACATTGGACTTCTTTCTGTCCAAGAATTTGCAAAGGAGAGGCCTACTATGGCCACCATCGTTTCTATGCTTAATAGTGAGATTGTTAATTTTCCTGCTCCACGGCAACCCGCATTCACCCAAAGACAGATTGAGCAGAGCGGTGATTCATCTCAACTGAGTCATGATTCAAATTCCATCAACAATGTTACTGTCACAAACTTGCAAGGCAGATAG	2055	0.4097	MGGQQRPTTTRSSGIVTISHDKNLVVLNGTKHVIWSSNVSTFVASNSTAQLLDTGNLVLVDDTTGKTIWESFKHPSDTFLPNMIISTNQKTGEKVKATSWKSPSDPAIGNFSGSLDRLSAPEVFVWKQSQPFWRSGPWNGQVFIGLASNLMYTSAYLNGFSIGRGENDTVEITYTLPNNSFFGTIVVSPEGKLVYTAWINRFLVGKRVFQENDCDVYGFCGPYGSCDSNNSPICTCLRGFEPRNVDEWNRQNWTSGCVRKDALQCERVKNGSEAGEGDGFLKLQMTKVPDFAQQSYLSVDACRTECLKNCSCTAYAYDDGIGCLSWSGKLIDIVRFSSGGVDLYIRQPHSELLDVDGKRNVTAIIIVSVIVGAVIVATCTYFLWSWTSKRTVRRKERQGSLVLNTGETHLENRSVGLIGDVKQVKIEDLPLFDFRIIATSTNNFDSANKLGQGPSQKKVLDWQKRLNIIEGISRGLLYLHRDSRLRIIHRDLKPSNILLDGELNPKISDFGMARIFGGSENEANTRRIVGTYGYMSPEYAMEGLFSEKSDVFSFGVLLLEIISGRKNTSFYKHEQSLSLLGYAWKLWNEEEIVSLIDPDISNPDCVDHILRCIHIGLLSVQEFAKERPTMATIVSMLNSEIVNFPAPRQPAFTQRQIEQSGDSSQLSHDSNSINNVTVTNLQGR	684

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi31g00061	684	SUPERFAMILY	Protein kinase-like (PK-like)	455	667	IPR011009	-
	Sebi31g00061	684	SMART	ntp_6	275	347	IPR003609	-
	Sebi31g00061	684	PANTHER	BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN	7	628	-	-
	Sebi31g00061	684	SUPERFAMILY	alpha-D-mannose-specific plant lectins	10	106	IPR036426	-
	Sebi31g00061	684	CDD	PAN_AP_plant	263	346	-	-
	Sebi31g00061	684	ProSiteProfiles	PAN/Apple domain profile.	265	348	IPR003609	-
	Sebi31g00061	684	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	445	645	-	-
	Sebi31g00061	684	Pfam	S-locus glycoprotein domain	133	243	IPR000858	GO:0048544
	Sebi31g00061	684	Pfam	Protein kinase domain	455	569	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi31g00061	684	ProSiteProfiles	Bulb-type lectin domain profile.	1	72	IPR001480	-
	Sebi31g00061	684	ProSiteProfiles	Protein kinase domain profile.	330	652	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi31g00061	684	Pfam	D-mannose binding lectin	6	101	IPR001480	-
	Sebi31g00061	684	Gene3D	-	7	139	-	-
	Sebi31g00061	684	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	487	499	IPR008271	GO:0004672\|GO:0006468
	Sebi31g00061	684	CDD	EGF_CA	212	244	-	-
	Sebi31g00061	684	Pfam	PAN-like domain	276	333	IPR003609	-
	Sebi31g00061	684	Gene3D	Transferase(Phosphotransferase) domain 1	449	645	-	-
	Sebi31g00061	684	SMART	serkin_6	364	642	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi31g00061	Sebi-Chr31	703412	706860	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi31g00061	432	684	Receptor kinase-like Gene Family	AT4G23280	47.018	4.00e-78	259

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Sebi31g00061		Pkinase	3e-26	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi31g00061	-		-	cave:132169965	681.019