Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi31g00058 ATGAATTTCAGAAACTTGATAATGGTTCTGCTCCTAGTTTCCTCTTTTGGTCTGTGCTTAAATTCTGCCAACGACACCATTACATCAGCCCAATTCATTAGAAACCCTGACACACTAAGCTCAAATAACACTAACAGAAACCAGCCACTAACAGAAAACTCTTCTGGGATTGTTAAGATTTCTGAGGATGGCAATCTTGTGGTGATAAACAGCCAGAATAAGGCTGTTTGGTCATCCAATGTCACAAGTATTGCTGCCAATTCAACTGCAAAACTTCTAGACACAGGAAATCTTGTTCTGCTAGATGATGCAACAGGAGAAGTTATGTGGGAGAGTTTCCAACATCCTTCTGATGTTCTTGTTCCAAAGATGAAACTCAGCATCAACAGAATAACTGGTGAGAAAGTATACTTAACATCATGGAAAAACTCTTCTGATCCATCCATTGGATACTATTCTGGTACTCTTGAACGCCCCAATGCTCCAGAGTTTTTTCTCTGGGTCAATGGAACTCTTCCATATGCTCGCTCTGGTCCATGGAATGGTCGAATTTTTATTGGTTCTCCCCCTGATGTCAAATGGGTATCTATATGGATGGAAAGTGATAAAGAAGATGATGGAACTGTTTGTGTTTCTTATAATTTCGAGAATCAATCTCAGTTTGGAATCTTGGTCTTGAATCCACAGGGTCAACTAACAATAGCATGGTGGAACAACAGAAAGGAAGTTTGGAGGCAGGTGATCCAAGGAACTTCTTGTGATCTTTATGGCATTTGTGGGGCATTTGGAAGCTGTAATTCGCAGAGCTCACCAATATGCAGCTGTTTGAATGGCTATAAGCCCAAAAATCTAGAGGAGTGGAATAGGAAAAATTGGACCAGTGGGTGGTCAGCTTCTTTGGAAAGTGAATGCAGAGCTCAGTGCTTGGAAAATTGCTCTTGCTTGGCATATGCATATGAGAGTGGTGTTGGTTGCATGGTTTGGAGCAGAGACTTGATAGACATGCAAAGATTCTCAAGTGGAGGGGTTGATCTCTACATTCGTGTGGCACCTTCAGAACTCGGGACAATTGAAAGATGGTCAGGAAATAGCAGTGAAAGACTCTCAAAAACATCTGGACAAGGGTTAGAAGAATATCCAGTAAAAAAGAAGGATCTAGATTGGCCAAAACGCTTCAAGATTATTGAAGGAATCTCTCGAGGTAATGATATACAAGCTAGTACTAGCAGAGTTGTTGGGACATTTGGCTATATGCCTCCAGAGTATGCATTCCGAGGGTTGTTTTCTGAGAAGTCAGATGTGTTTAGCTTTGGAGTGTTGGTGCTAGAGATTATTAGTGGCAAAAAATCAGTAGCTATTATGACTATGACCTATCATTGA 1380 0.4094 MNFRNLIMVLLLVSSFGLCLNSANDTITSAQFIRNPDTLSSNNTNRNQPLTENSSGIVKISEDGNLVVINSQNKAVWSSNVTSIAANSTAKLLDTGNLVLLDDATGEVMWESFQHPSDVLVPKMKLSINRITGEKVYLTSWKNSSDPSIGYYSGTLERPNAPEFFLWVNGTLPYARSGPWNGRIFIGSPPDVKWVSIWMESDKEDDGTVCVSYNFENQSQFGILVLNPQGQLTIAWWNNRKEVWRQVIQGTSCDLYGICGAFGSCNSQSSPICSCLNGYKPKNLEEWNRKNWTSGWSASLESECRAQCLENCSCLAYAYESGVGCMVWSRDLIDMQRFSSGGVDLYIRVAPSELGTIERWSGNSSERLSKTSGQGLEEYPVKKKDLDWPKRFKIIEGISRGNDIQASTSRVVGTFGYMPPEYAFRGLFSEKSDVFSFGVLVLEIISGKKSVAIMTMTYH 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi31g00058 459 CDD B_lectin 44 116 IPR001480 -
Sebi31g00058 459 SUPERFAMILY Protein kinase-like (PK-like) 382 449 IPR011009 -
Sebi31g00058 459 SMART ntp_6 268 349 IPR003609 -
Sebi31g00058 459 CDD PAN_AP_plant 294 350 - -
Sebi31g00058 459 Gene3D Transferase(Phosphotransferase) domain 1 392 457 - -
Sebi31g00058 459 Pfam D-mannose binding lectin 45 142 IPR001480 -
Sebi31g00058 459 Pfam Protein tyrosine and serine/threonine kinase 412 454 IPR001245 GO:0004672|GO:0006468
Sebi31g00058 459 SMART blect_4 24 116 IPR001480 -
Sebi31g00058 459 SUPERFAMILY alpha-D-mannose-specific plant lectins 43 147 IPR036426 -
Sebi31g00058 459 Pfam S-locus glycoprotein domain 176 283 IPR000858 GO:0048544
Sebi31g00058 459 Pfam PAN-like domain 301 335 IPR003609 -
Sebi31g00058 459 ProSiteProfiles Bulb-type lectin domain profile. 1 113 IPR001480 -
Sebi31g00058 459 Gene3D - 18 127 IPR036426 -
Sebi31g00058 459 ProSiteProfiles PAN/Apple domain profile. 275 350 IPR003609 -
Sebi31g00058 459 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 44 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi31g00058 Sebi-Chr31 686289 689042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi31g00058 380 450 Receptor kinase-like Gene Family AT4G23290 42.982 2.71e-19 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi31g00058 S_locus_glycop 3.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi31g00058 - - gmx:100800296 468.388