Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi31g00031 ATGGCGTCTGCTTCGTCCTCTTCTTCCTCCTCCAAGCTGTGCTTCAATTCTGACTGCAAAGAATTGAAGTCTGAAAGACCTAAGAAAGGTTGGAGGCTCCGTAACGGAGACCTAGCCGAGCTTTGCGATCGATGCGGTTCCGCTTTTGAAGAAGGGAGGTTCTGTGAGATTTTTCACTCTAATGCTTCAGGTTGGAGAAATTGTGAGACTTGTAGGAAGCGGATTCATTGTGGGTGTATTGTTTCAAGTCACGCCTTTGTGTTGTTGGATCCTGGAGGAATTGAGTGCTTTGCATGTGCCCGCAAAAATATTATTTTGCCGTCTAACCTGCCGTGGTCACAATCCTTTTCCCTTCAAAATCGTATATCGGAGAGACTTAGAGACCTGTCTGCCAAAAGTTGGAATCAGTTAGCTGGATCAGGTCCTGTACCATGGAAGCAAGCACCCAGTCTGTTCAATTCAGCTTCTTCCTCCGACCTGCTTCCAGATGTGCCATCTCTAGTTGAATTACCAAATAGCTTTGACAAAATTTATAGCAATGAAAGGTTACCTGCCTCGTCCTTGGAAAAGAAAAATGAGGATTTGTCTGGAATATCAGTTAATTGGAGCGTCAAGCTTGGTTCACGGGAAATGATGCTTATGAATGGTTTGAGGAATGAGGACAAATCAAGTTCTTGTTTAAATATGTGCCAACAGCCTTCTATGAAGGAAGATTCATCTCCTCAACCATTTGGAAAGCAATTCAGTGGCACTATGCATTTAGCACTTGACACATCTGGTGAAGCTCAAGTTCGCAATGGGCGGCCTCGAGCAGATGCCCGAGGAAGAAACCAGTTACTGCCACGGTACTGGCCGAGGTGTACTGATCTGGAGCTACAGCAAATATCTATTGATTCTAATTCTGTAATTACACCCTTGTTTCAAAAAACATTGAGTGCTAGTGATGCTGGACGCATTGGGCGTTTAGTGCTACCCAAAAAGTGTGCTGAGACCTACTTTCCACCAATTTCTCAGCCTGAAGGATTGCCACTTAAAATCCTTGATGCAAAAGGCAAGGAATGGATATTTCAGTTTCGCTTCTGGCCAAACAATAACAGCAGAATGTATGTTTTAGAGGGTGTCACTCCATGCATACAGTCCATGCAGTTGCAAGCAGGTGACACAGTAACTTTTAGCCGGTTGGAGCCAGAAGGGAGGTTAGTTATGGGATTTAGAAAGGCTTCAAGTGCTATGCCATCTGATCAGGATAATGAAACTAATAAGACTGGAAATGGATTTTCTGCACATGGTGAAGTTGAATTGGCTGATCCTAATTCATGGTCTAAAGTTGATAAGTCAGGATATATAGCAAAAGAAGCACTGGGGAGCAAATCTTTAATCTCTAGAAAGAGAAAGAGCAGCATATTGGGTTCAAAGAGTAAACGTCTAAAAATTGAAAATGAGGATCTAATAGAGCTGAAAATTACATTGCAAGAAGCTCAAGGCCTGCTCCGCCCCCCTCCTAATCATGTTCCAAGTATTGTGGTGATTGAAGGTTTTGAATTTGAGGAGTATGAGGATGATCTTAACCTATCGTTCAAACTTGCTTTTGATGCTCCGGTGCTTGGGAAGCCCACAATTTTCACCAGTGATAATGTGGGTGAAAAGATCCAGTGGGCTCAATGCGAAGATTGTCTCAAGTGGCGCAAATTGCCAGCAACTGCACTTCTTCCATCAAAATGGACATGTTCTGATAATTCATGGGATCCAGAAAGATCTTCTTGTTCAGCTGCGCAAGAGCTGACAGCGGAACAGCTTGAAAATTTGCTACCCCCTTGTAATTCAGCTGTTTCCAAGAAAATGAAGGCCGCCAAGCAGGATCCTGACAATGCTGAAGCTTTGGAAGGACTTGATACTCTTGCAAATCTAGCTATTCTGGGAGAAGGTGAGGCACTCCCAACATCTGCCCAGGCCACAACTAAACACCCCCGTCATAGACCTGGCTGCTCTTGCATTGTTTGCATTCAGCCTCCCAGTGGAAAGGGTCCCAAGCATAAGCAGACATGCACATGTAATGTCTGCTTAACAGTGAAGCGTCGTTTCCGGACCCTTATGTTGCGGCGTGAGAAGAAACAATCAGAAAGAGAAGCAGAGACAACACGGAAAAAGCAGCAGCAACAGCATCCTCAGCCATTACCTTCATCTGAAATTTTGCTTGATGATGACTCCTTGCCTTGTAGTAACACGGGTGATAGTAGCCCAAACCAGAACAAGGAGAGTAATGATGGTTCTGATGATGATCCTAACCGGATAAAATCATCTGCTTCACCATTCAAAGGCCAAATTGACCTCAATATTCAGCCAGAGCGAGAAGAAGAATTATCACCTGGTTCAGATTCTGGCGGCATGATGAAGTTGCTCCATGATGCTACTGATATGTATCTCAAGCAGCAGCCTGTGTTGAACTCTGGTACTGGAGATTTGTCAGGCAGTCAGTCACAGGTGGTAGGAGATGGGTTAAGGGAAGAGAAACTTAGCAATGGTCATGGCAGTAGTAGTCATAGTGCAGATAAGGAACATACCCAATCTTTGTCTATGAATGTGTGA 2586 0.442 MASASSSSSSSKLCFNSDCKELKSERPKKGWRLRNGDLAELCDRCGSAFEEGRFCEIFHSNASGWRNCETCRKRIHCGCIVSSHAFVLLDPGGIECFACARKNIILPSNLPWSQSFSLQNRISERLRDLSAKSWNQLAGSGPVPWKQAPSLFNSASSSDLLPDVPSLVELPNSFDKIYSNERLPASSLEKKNEDLSGISVNWSVKLGSREMMLMNGLRNEDKSSSCLNMCQQPSMKEDSSPQPFGKQFSGTMHLALDTSGEAQVRNGRPRADARGRNQLLPRYWPRCTDLELQQISIDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAETYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSAMPSDQDNETNKTGNGFSAHGEVELADPNSWSKVDKSGYIAKEALGSKSLISRKRKSSILGSKSKRLKIENEDLIELKITLQEAQGLLRPPPNHVPSIVVIEGFEFEEYEDDLNLSFKLAFDAPVLGKPTIFTSDNVGEKIQWAQCEDCLKWRKLPATALLPSKWTCSDNSWDPERSSCSAAQELTAEQLENLLPPCNSAVSKKMKAAKQDPDNAEALEGLDTLANLAILGEGEALPTSAQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSEREAETTRKKQQQQHPQPLPSSEILLDDDSLPCSNTGDSSPNQNKESNDGSDDDPNRIKSSASPFKGQIDLNIQPEREEELSPGSDSGGMMKLLHDATDMYLKQQPVLNSGTGDLSGSQSQVVGDGLREEKLSNGHGSSSHSADKEHTQSLSMNV 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi31g00031 861 FunFam B3 domain-containing transcription repressor VAL1 285 412 - -
Sebi31g00031 861 Gene3D - 550 603 - -
Sebi31g00031 861 Gene3D - 285 411 IPR015300 -
Sebi31g00031 861 ProSiteProfiles Zinc finger CW-type profile. 546 596 IPR011124 GO:0008270
Sebi31g00031 861 MobiDBLite consensus disorder prediction 699 861 - -
Sebi31g00031 861 Pfam B3 DNA binding domain 307 406 IPR003340 GO:0003677
Sebi31g00031 861 MobiDBLite consensus disorder prediction 408 431 - -
Sebi31g00031 861 SUPERFAMILY DNA-binding pseudobarrel domain 304 407 IPR015300 -
Sebi31g00031 861 ProSiteProfiles B3 DNA-binding domain profile. 307 408 IPR003340 GO:0003677
Sebi31g00031 861 SMART B3_2 307 408 IPR003340 GO:0003677
Sebi31g00031 861 Pfam CW-type Zinc Finger 551 593 IPR011124 GO:0008270
Sebi31g00031 861 MobiDBLite consensus disorder prediction 809 829 - -
Sebi31g00031 861 MobiDBLite consensus disorder prediction 734 752 - -
Sebi31g00031 861 MobiDBLite consensus disorder prediction 835 849 - -
Sebi31g00031 861 CDD B3_DNA 305 406 IPR003340 GO:0003677
Sebi31g00031 861 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 11 824 - -
Sebi31g00031 861 MobiDBLite consensus disorder prediction 410 426 - -
Sebi31g00031 861 MobiDBLite consensus disorder prediction 700 716 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi31g00031 Sebi-Chr31 437780 449097 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi31g00031 10 704 B3 DNA Binding Superfamily AT4G32010 46.273 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi31g00031 B3 1.2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi31g00031 K09287 - gmx:100807252 1556.19