Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi31g00012 ATGGCGGATGAGGGATTCGACTTCCAATTGGTGGACAACGGGGACGCCGCCGATGACGATAAGCTCTTCATGGATATCGATTCCATTCTCAGCGTTCTTGATGAAGATCGCGATCCTTCCGAGTATGATAATTTTATGGATATCATGCTGCAGAGTAGTCATGAGGATTCTTCATTGAAAGATGTTTCACCTAGTGAATCTGGCATCCTTGATAATTTTCTACTTCAAAATGGGAATTATGTGCTTGACTGCGAACATGAAAACCAGGTACCTTCATCACAGACTTGCTCTTCCCCAAATGCTTTTGCCGGTGGTTACAGAGGCTCTTTCTCTGTGGTTGAAAGTGATGACATTTGTCACACAGAAAGGACAGGAGTTTCTAAATGTGAGATACCTACTTACAGTGTGGACACGAATATCCGTGAGGCAAATTCAAACGTTGTAGTTGTTTGTGGAAATAATTTGAATCTGAGTCTGTGGAAGGGTGTAAATGATAGCCAAGTCAAGCATGTAGGAGATGATGTAGAATCTGAATATGCTTCACACAGCTCTATCATTGAGAACGTTGATGTAACCCTTGAAGATTATGGAACATTTTTGAAAGACGGTGTTGTAGTTTCTGGGAAGCAGGAAAATGACTTGTGTACATCATTTGAAATGTCGTTTGTGGATGCTGACAGAGCAACACATGTTGCAACTTCAACTGATTCTACTATTTGTCAAGGTTCCAATGTTCCAAGTGATTTTAGTGACTACTATTCATCTTTGAACTGTTACCAGAGTATTGATGATAGACTTGATGTTTCCAACACTCCTGGTTATTTTCCTAATGGTGTTTGTCCTCAATTCTGGAAAAATGAAGAGATGACAGGGAACATGAATGTTGCAAAAACGGAGTTTTTTGCTGATACAGCACGTGTGAGTAGTGGCTTGCATTCCAGCACTACTGGTGGAATATCTGTTCAAGATGGTCAATTTTTGTTAGGAGATAGTGAATATCCTTCATTTTTTCCTGGTAATGTTCTGTTTGAAGACAGTGCATCAGTGAAACTTTCAACTTGTGCTTCATATATTTCAAGTGAAAGCCCATCAGTTCATGTCAAAGCTGAAAATAATGACCGAATTATGCCTTACCAAGATTCTTTTCACAGTGATGATGCTGAGTTAAAGGCAGGTCAAGAGGTGAAACAATTTGCTGGTATTTCCCCTACTATTAGATGCCAGGGTTATGATTTTTTCAAGCACCAGGATAGTGGTGCAATTGTAACAGCCAGAAAAGTGAATTATTACCAAGATATTATGGATGAAACTGCTAATGAATTTCCACGGAACATTGGAAACTTGAATTTGAAGTCCTTAGACTTGTCTATTGCCCGAGCATCAGTTCCCAGTGGAAAGCAGTATAATTGTGTTACAAGGGAAGGGGAGGATAAAACCATTGGACATAAAAATATTGATACTCAACTTTCAAAAAGAAGTATTGGGAGATCCAATGTTGAGGATGACTCTGATGTTTGCATTATTGAAGACATCAGTCACCCTGCACCTATCAGTCGATGTGCAGAACTTGGGAATTCCCTTAGTATGTCACAATCTTCTAGATCTGGTTATACCCAACCTTATATGTTGGGAGGCACAAGATCGAAGGCGCGTGATGAGCAATACATTTTACGAGTTGCATTGCAGGATCTATCTCAGCCAAAGTCAGAAGTTAGTCCACCAGATGGACTGCTAGCAGTTCCACTTTTACGACATCAGAGAATCGCTTTATCTTGGATGGTTCAGAAGGAAACATCAAGTCTATACTGCTCAGGGGGTATTCTTGCAGATGATCAGGGTCTTGGGAAAACGGTGTCAACTATTGCTTTAATATTAAAGGAAAGACCTCCATTGCTTAAGACATGCAGCAATGCACCAAAAAGTGAATTAGAAACTTTAAATTTGGATGCAGATGATGACCTGATTCCTGAAAATAGTATAGTGAAGAAGGAATCTAATATGTGTCAGGATACATCTAGTATAAATCCAGTCACAAGCATGAGTTTGTTGGTGCATGGGAAAGGAAGGCCATCTGCGGGAACACTTATTGTTTGTCCGACTAGTGTCCTGCGACAATGGGCTGAGGAGTTGCATAATAAAGTGACCTGCAAAGCAAATCTCTCTGTGCTAGTGTACCATGGAAGCAATCGAACTAAAGATCCTTATGAGCTTGCCAAGTATGATGTTGTTCTGACGACTTATTCAATTGTTAGCATGGAGGTCCCTAAGCAACCTCTGGTTGACAAAGATGATGAAGAAAAAGGAATTTATGAAGATCATGCTGTAGCAAGTAGGAAAAGGAAATGCCCTCCTAGTTCTAGTAGGAGTGGCAAGAAGGGATTGCATAGCACAATGCTTGAGGCTGTTGCTCGTCCTCTTGCAAAGGTGGCTTGGTTTAGAGTTGTTTTGGATGAGGCCCAGAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGAGCTAAACGTAGATGGTGTTTATCAGGGACTCCCATCCAGAATGCAATTGATGATCTCTACAGTTACTTTAGATTTTTAAGATATGATCCTTATGCTGTGTACACATCATTCTGTTCCACAATTAAGATCCCTATCAACAGAAATCCATCAAAGGGGTATAGAAAGCTACAGGCTGTTTTAAAGACGATAATGTTACGTCGGACAAAAGGCACACTTCTTGATGGTGAACCTATTATTTCCTTGCCACCTAAGTTTGTAGAGTTGAAAAAAGTAGATTTTTCACAGGAGGAACGTGATTTCTATTCAAGACTTGAGGCTGATTCACGTGCACAGTTTCAGGAATATGCTGATGCTGGAACTGTGAAGCAAAATTATGTCAACATTTTGTTAATGCTTCTGCGCCTTAGACAAGCTTGCGATCACCCTTTGCTTGTCAAGCGTTACAATTCTAACTCTCTTTGGAAATCTTCGGTTGAAATGGCCAAGAAGCTTCCTCAGGAACAACAATTATGTCTTCTAAAATGTTTAGAGGCTTCCTTGGCCCTCTGTGGTATCTGTAATGATCCTCCTGAAGATGCTGTTGTATCAGTCTGTGGTCATGTTTTTTGTAACCAGTGCATTTGCGAACATCTTACTGGTGATGACAATCAGTGCCCTACTACAAATTGCAGAACACGACTAAGCATGTCTTCGGTGTTTTCCAAAGCTACATTGAACTGTTCTTTATCTGACCAGGCTTGTGATCATTTGCCTGGTTGCTCCGGTTCTGAGGTGGAGGAATCTGAGCCTTGTTCTCAGACTCAGCCATGTGATTCTTCAAAAATAAAGGCTGCACTTGAGGTGTTGCAGTCATTGTCTAAGCCACAATGCCATAATTCTGAAAAAAATTGTGTACAGAGCACTTTTGGAGAAAGTAGTACTGATTGCCTTGGGAGCTCCTCTTGTCCTGACAATGGGAAATCCTGCAATGATTTTCCTGAGCATCAAAATGTGTTTATAGAGAGAAGCTCTAATGATTCAGTTGGTTCTGTAGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACGAGGATGCTGGATTTGCTTGAAGCATGTCTTAAGAAATCTTCAATTCAATATAGAAGACTTGATGGAACAATGTCAGTCATTGCTAGAGATAAAGCTGTTAAAGATTTTAATACACTCCCTGAGGTATCAGTTATGATTATGTCTTTGAAGGCTGCCAGTCTTGGTCTGAACATGGTGGCAGCTTGCCATGTTCTAATGCTAGATCTATGGTGGAATCCTACAACTGAAGATCAAGCAATAGACAGAGCGCATCGAATTGGACAGACTCGTCCTGTTACAGTCTTGCGGTTAACTGTGAAAGATACAGTTGAAGACCGAATTTTAGCTCTGCAGCAAAAGAAGCGAAAGATGGTTGCATCTGCGTTTGGAGAGGATGGAACTGGTGGTCGTCAAAGCCGCCTTACAGTGGATGATTTAAAATACTTGTTCATGATGTGA 4014 0.4081 MADEGFDFQLVDNGDAADDDKLFMDIDSILSVLDEDRDPSEYDNFMDIMLQSSHEDSSLKDVSPSESGILDNFLLQNGNYVLDCEHENQVPSSQTCSSPNAFAGGYRGSFSVVESDDICHTERTGVSKCEIPTYSVDTNIREANSNVVVVCGNNLNLSLWKGVNDSQVKHVGDDVESEYASHSSIIENVDVTLEDYGTFLKDGVVVSGKQENDLCTSFEMSFVDADRATHVATSTDSTICQGSNVPSDFSDYYSSLNCYQSIDDRLDVSNTPGYFPNGVCPQFWKNEEMTGNMNVAKTEFFADTARVSSGLHSSTTGGISVQDGQFLLGDSEYPSFFPGNVLFEDSASVKLSTCASYISSESPSVHVKAENNDRIMPYQDSFHSDDAELKAGQEVKQFAGISPTIRCQGYDFFKHQDSGAIVTARKVNYYQDIMDETANEFPRNIGNLNLKSLDLSIARASVPSGKQYNCVTREGEDKTIGHKNIDTQLSKRSIGRSNVEDDSDVCIIEDISHPAPISRCAELGNSLSMSQSSRSGYTQPYMLGGTRSKARDEQYILRVALQDLSQPKSEVSPPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPPLLKTCSNAPKSELETLNLDADDDLIPENSIVKKESNMCQDTSSINPVTSMSLLVHGKGRPSAGTLIVCPTSVLRQWAEELHNKVTCKANLSVLVYHGSNRTKDPYELAKYDVVLTTYSIVSMEVPKQPLVDKDDEEKGIYEDHAVASRKRKCPPSSSRSGKKGLHSTMLEAVARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKIPINRNPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKFVELKKVDFSQEERDFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWKSSVEMAKKLPQEQQLCLLKCLEASLALCGICNDPPEDAVVSVCGHVFCNQCICEHLTGDDNQCPTTNCRTRLSMSSVFSKATLNCSLSDQACDHLPGCSGSEVEESEPCSQTQPCDSSKIKAALEVLQSLSKPQCHNSEKNCVQSTFGESSTDCLGSSSCPDNGKSCNDFPEHQNVFIERSSNDSVGSVGEKAIVFSQWTRMLDLLEACLKKSSIQYRRLDGTMSVIARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQQKKRKMVASAFGEDGTGGRQSRLTVDDLKYLFMM 1337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi31g00012 1337 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 786 916 - -
Sebi31g00012 1337 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 597 866 IPR014001 -
Sebi31g00012 1337 Pfam Helicase conserved C-terminal domain 1181 1279 IPR001650 -
Sebi31g00012 1337 Pfam Zinc finger, C3HC4 type (RING finger) 1020 1057 IPR018957 GO:0046872
Sebi31g00012 1337 SMART ring_2 1020 1058 IPR001841 -
Sebi31g00012 1337 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 676 763 - -
Sebi31g00012 1337 ProSitePatterns Zinc finger RING-type signature. 1035 1044 IPR017907 -
Sebi31g00012 1337 CDD DEXDc_SHPRH-like 582 904 - -
Sebi31g00012 1337 Gene3D - 552 645 IPR038718 -
Sebi31g00012 1337 ProSiteProfiles Zinc finger RING-type profile. 1020 1059 IPR001841 -
Sebi31g00012 1337 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1173 1332 IPR001650 -
Sebi31g00012 1337 SMART ultradead3 578 881 IPR014001 -
Sebi31g00012 1337 Gene3D - 791 905 IPR038718 -
Sebi31g00012 1337 Gene3D - 674 782 IPR038718 -
Sebi31g00012 1337 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 567 904 IPR027417 -
Sebi31g00012 1337 CDD SF2_C_SNF 1182 1289 - -
Sebi31g00012 1337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1013 1071 IPR013083 -
Sebi31g00012 1337 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 402 1336 - -
Sebi31g00012 1337 SMART helicmild6 1196 1279 IPR001650 -
Sebi31g00012 1337 SUPERFAMILY RING/U-box 1017 1069 - -
Sebi31g00012 1337 Gene3D - 1172 1332 IPR027417 -
Sebi31g00012 1337 Pfam SNF2-related domain 602 981 IPR000330 GO:0005524|GO:0140658
Sebi31g00012 1337 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 912 1336 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi31g00012 Sebi-Chr31 204146 211642 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi31g00012 473 1336 RAD5 or RAD16-like Gene Family AT1G61140 61.469 0.0 987
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sebi31g00012 SNF2_N 1.3e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi31g00012 - - gmx:100805307 1904.03