Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi319g00058 ATGTTAGGTGGTCGAACAGTTCTCGACATTGTTGGTGAAGATGTTGTAGTGATCTTCGACAAGGCCACTGGAAAGTCTAAGGGCTACGACTTCGTCGCCTTCCGCCACGTCGACAGTGTCGTCCTCGCCCTCCGCGAGCCCAACAAGCGCATTGACAGGTGTGTCACCGTCACACAACTCACCATCGCTGGAAATTCCAACTCTAACGCCAACACAACCTACATAGCGCTTCGTAAGATATACGTTGTAAACGTCCCTCTGGATCTCCCAGTATACAAGCTCCTCGCCCATTTCTCTCTCTACGGTGAGATCGAAGAAGGTCCATTGGGCTTTGACAAGCAAACAGGAAAGTCTAAGGGGTTCGCGCTCTTCATGTATAAGACCTCAAAGAGGGCGCAAGCAGCACTCTTGGATTCCGTGAGGACCGTGGAAGGGAGACAGCTGAATTGCAAGTTCGCAATAACTAACAATAAGCATAGTGAATTCCCTTGCTACAAGGATGTGAATGCCAGAAACTCTTTGACACAATGCCTTAAAAGGATGTTCAGAAACTTTTTGTTGTAA 564 0.4823 MLGGRTVLDIVGEDVVVIFDKATGKSKGYDFVAFRHVDSVVLALREPNKRIDRCVTVTQLTIAGNSNSNANTTYIALRKIYVVNVPLDLPVYKLLAHFSLYGEIEEGPLGFDKQTGKSKGFALFMYKTSKRAQAALLDSVRTVEGRQLNCKFAITNNKHSEFPCYKDVNARNSLTQCLKRMFRNFLL 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi319g00058 187 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 147 IPR000504 GO:0003723
Sebi319g00058 187 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 78 155 IPR000504 GO:0003723
Sebi319g00058 187 Gene3D - 8 64 IPR012677 -
Sebi319g00058 187 PANTHER GEO13361P1-RELATED 71 158 - -
Sebi319g00058 187 SUPERFAMILY RNA-binding domain, RBD 13 49 IPR035979 GO:0003676
Sebi319g00058 187 Gene3D - 65 162 IPR012677 -
Sebi319g00058 187 SMART rrm1_1 79 151 IPR000504 GO:0003723
Sebi319g00058 187 SUPERFAMILY RNA-binding domain, RBD 59 160 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi319g00058 Sebi-Chr319 1124993 1126081 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi319g00058 75 153 C2H2 Transcription Factor Family AT2G19380 37.975 1.35e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi319g00058 K12741 - gmx:100776220 218.394