Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi319g00051 ATGGAGCTCCTATATTGGATAGAAAAAAGTACGCGGCCGTGGATGGAGGTCGTAGTTGTTCTTTATCTCCGTCTGTATGGTGGTGAAGATCATTATTTGGGTTTTGAGAAGGCACCTTCTTCCCCTGGTGCCCTTCCTTCAACGGCAGATCTCAATGACAGTGTCGAGGAGGAAGCACCTTGTCAGGAAATTCAGAACAAGATGGATTTGACGGATGAAGATGAAGGGGGCACCGAAACTGGGGAGAAAGTTGGGAAAGTTTCGGACTTTAACGATGGTGGAAAAGTTTGCGATGAAGAATCTGCTAAGGGTGAAGTGTGTGATGGAGATAGCAGGGAAAAAAGCAGGGGTAGAACTCGGCATTACCCTTTGTGGCCTGAAGCTGAAGATTGTGCATTCTACATGAAGAATGGGACTTGCAAGTTTGGGTTCAGTTGCAAGTTTAACCACCCCATTAGGAGGAAAAATCAGGTTTTTGTTCTATCTTTCTCTCTGAGCTTAGAACACTCACCTGAATGGGAACTGATGGTTGTGAAGTTGTGGGGGCATTACCAAACTCTGGAATATTACTCGTATTGGTTCCTAATATTGAAACTGGGATGGGGCTTAACTGGAGCAGCAATTACTCTTAACACATCATGGTGGGTGATTGTCATTGCACAATTTGGTTACATTTGGATCACCACATCAGATGGTGCTTGGAGTGGATTCTCATGGCTAGCATTTTCAGACTTGTATAGTTTTGTGAAACTTTCTTTGGCATCAGCTGTTATGTTATGCTTGGAGTTTTGGTACATGATGATACTGGTGGTGATAACAGGGCGTTTGGCAAACCCTATAATACATGTGGATGCCTTATCTATTTGTATGCACATAAATGGTTGGGATATCATGATTGCTTTTGGGTTCAATGCTGCCATAAGCCTCCCAACCAAAGCAAAGCAAGTTTCTCTCTCTCTGCTGCATCTGCACTCCCTCTTCTCCTCTCACAGCGCAAGTTTCAAGAAATCCAAGAAAAAGTCTCGCTGCTCTGTCAAGAAATCGTCTCCGACTTCTATTTCTTTTCCGTTCACTGTTGAATCTTCTTCTATTGCTGCAACTGCCACTACGTTTCCATCAGCATGCTCTGCATTTGGTTTGTCTTCTGCTGCTTCTGCTGAATCCTCTTCAATGTTCTTGATGCATGATTCTGGCAAAAATTCCACTGAAAAATTGGAGTGGAGATCATCACCGAACTCTCTTAATTTTGGAAGCTTCGAATTAGCGGATTCTTCATCTTCTTGCAACCTCAAAACAGAGGAAGTGATGGACGAAATTTGTTTTTCCATTGATCAGAGACGTCAAGACCTGAGGATCTCCGAGAGAAAGGGGGAAAACCGGAACCTAGATGAGAAAGAAGAAGTACGAATCCAACAATGCGTCGCTGCGTTGCTTGAGGAGCAGGGCGCCACTGCTCTCCTTCGTGTACCACAGTATCTGTTTGATATAAAGCTCGAAAGGAATGTTCATAAACTGTTTGATGCAATGTCTGAAGGAGATGTGCAGAAGTTGTTTGTTGAAATGAATTTTCCAAATTACACTAGACAATCTGGTTATCAGAAGGAGGAGTCTTCCTCTGTCATGGGTCCTCTCCTATCGAGTTATGTTTTTGAACCATGCTTGACATTATTGGTGCAAGAGATGTTTCTTGTGGCTGAATTTGATTTAAAATCTGTTTCTCAAATTTTTGTCGAGGATAATGTGGTTCTGAAACTCAATTTGTGGATTATAGATTTCAAATACATTGAGCAAGGTGCTATTATACATGCTGGTACAATTGTTGCAATATCAAGCAATATTGTCACTACTGTCTACATAGCCACTGTTGAAGTTGTTGGTATTGTTGGAACCAGCATAGCGTATGGGATTTATATGGCAGTGTTTAGCAACTTAAGATATGTTTTTCTTGGAGTGAGCTGTGGCGCAAATATTGCAGATTATGTGGCACAAAAGGCTGTAGAAGGAGGCAACCTTCCAGACCTAAACATTGCTGTTGCTGAGAGATTTAAGGAAGATACTGGACTAGTGGTAGACCTTGAAAAGGAAGTTACTATTACAACTGGGTGCACAGAAGCAATTGCTGCCACCATATTAGGATTAATAAATCCTGGTAATGAGGTTATCGTGTTTGCTCCTTTTTATGATTCTTATGAAGCCACTTTATCCATGGCTGGTGCAAAAATAAAAAGTATCACTTTGCGCCCTCCAGATTTTGCTGTCCCGGTTGAAGAGTTGAAGTCCATCATCTCAAGGAATACCCGTGCCATTCTTATGGAATACCCGTGCATCTTTGGTGCCTCTGATGGCTGGCATGGTTCTCTCGCAAAGTTTTGGCTTTTAGTGTTTGTTGAGTCCCTCTTTTGGTTTCAAGTTGATATTGGTTGA 2424 0.422 MELLYWIEKSTRPWMEVVVVLYLRLYGGEDHYLGFEKAPSSPGALPSTADLNDSVEEEAPCQEIQNKMDLTDEDEGGTETGEKVGKVSDFNDGGKVCDEESAKGEVCDGDSREKSRGRTRHYPLWPEAEDCAFYMKNGTCKFGFSCKFNHPIRRKNQVFVLSFSLSLEHSPEWELMVVKLWGHYQTLEYYSYWFLILKLGWGLTGAAITLNTSWWVIVIAQFGYIWITTSDGAWSGFSWLAFSDLYSFVKLSLASAVMLCLEFWYMMILVVITGRLANPIIHVDALSICMHINGWDIMIAFGFNAAISLPTKAKQVSLSLLHLHSLFSSHSASFKKSKKKSRCSVKKSSPTSISFPFTVESSSIAATATTFPSACSAFGLSSAASAESSSMFLMHDSGKNSTEKLEWRSSPNSLNFGSFELADSSSSCNLKTEEVMDEICFSIDQRRQDLRISERKGENRNLDEKEEVRIQQCVAALLEEQGATALLRVPQYLFDIKLERNVHKLFDAMSEGDVQKLFVEMNFPNYTRQSGYQKEESSSVMGPLLSSYVFEPCLTLLVQEMFLVAEFDLKSVSQIFVEDNVVLKLNLWIIDFKYIEQGAIIHAGTIVAISSNIVTTVYIATVEVVGIVGTSIAYGIYMAVFSNLRYVFLGVSCGANIADYVAQKAVEGGNLPDLNIAVAERFKEDTGLVVDLEKEVTITTGCTEAIAATILGLINPGNEVIVFAPFYDSYEATLSMAGAKIKSITLRPPDFAVPVEELKSIISRNTRAILMEYPCIFGASDGWHGSLAKFWLLVFVESLFWFQVDIG 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi319g00051 807 SUPERFAMILY PLP-dependent transferases 670 774 IPR015424 -
Sebi319g00051 807 Gene3D - 671 774 IPR015421 GO:0003824
Sebi319g00051 807 PANTHER FI04487P 670 774 - -
Sebi319g00051 807 SUPERFAMILY CCCH zinc finger 124 153 IPR036855 GO:0046872
Sebi319g00051 807 MobiDBLite consensus disorder prediction 65 85 - -
Sebi319g00051 807 ProSiteProfiles Zinc finger C3H1-type profile. 125 153 IPR000571 GO:0046872
Sebi319g00051 807 Pfam Aminotransferase class I and II 671 774 IPR004839 GO:0009058|GO:0030170
Sebi319g00051 807 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 129 151 IPR000571 GO:0046872
Sebi319g00051 807 Gene3D - 121 175 - -
Sebi319g00051 807 SMART c3hfinal6 125 152 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi319g00051 Sebi-Chr319 967381 972390 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi319g00051 122 160 C2H2 Transcription Factor Family AT1G29570 48.718 6.71e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sebi319g00051 Aminotran_1_2 5.8e-10 CL0061
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi319g00051 K03327 - jre:108991683 210.305