Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi319g00036 ATGGAGGAAATTCAAGAGCCTCAGCCCCAGTCATCACTCGGTCAAGAAGATGGAGATGAAGTGATCACTGAAAGTTCTGCATTTGTTAAAGGGGAACCGCCACAAGAATTTAGTATCCCCACAAAAGTTGATTCTAACATTGAGGTCCTTCATGAGAAAGTCACCAAACAAATAATTAAGGAAGGCCATGGCCAGAAACCTTCCAAATATTCAACTTGCTTCTTCCATTACAGGGCGTGGTCTGAGAGCACGCAGCACAAGTTTGAAGACACATGGGAGGAGCAACGACCAATTGAGATGGTATTAGGAAAAGTGTGGCTAGCATCTTCTATAGAAGAAAGAAATGACTGGCTTGGGATTGGTGTGGCCAGCATGAAAGCTGGGGAGTGGGCATTGCTGTGGGTGGGCTGGGAATTAGGATATGGAAAAGAAGGAAGCTTTTCTTTTCCAAATGTTCCACCCATGGCAGATTTAGTTTATGAAGTCGAGTTCATCGGCTTTGATGAAACAAAAGAAGGAAAAGCTCGCAGTGATATGACTGTAGAGGAGAGGATTGGTGTTGCAGCGTATATAGGAGATTACTTCATGTTCCAATTGTTTGGGAAGTATAGAGATATGGCTCTAGCGATAAAGAATCCATGCCATCTTAACATGGCAACCTGTTTAATTAAGCTGAACCGCTATGAAGAAGCTATAGGACAATGCAGCATTGTACTGAGTGAGGATGAGAATAATGTCAAGGCATTATTTAGGCGAGGTAAGGCTAGAGCAGCACTTGGACAAATAGATGCTGCCAAGGAAGATTTCCTGAAAGCACATAAGTATGCCCCTGAAGATAAAGCAATTGCAAGAGAATTGAGGCTGCTTGTTGAACATGACAAGGCTGTTAACCAAAAGCAAAAAGAGATCTATAAAGGAATATTTGGACCAAGGCCTCAACCAGTACCCAAGAGAAGGAATTGGCTAATACTTATTTGGCAGTGGTTGCTTTGA 993 0.427 MEEIQEPQPQSSLGQEDGDEVITESSAFVKGEPPQEFSIPTKVDSNIEVLHEKVTKQIIKEGHGQKPSKYSTCFFHYRAWSESTQHKFEDTWEEQRPIEMVLGKVWLASSIEERNDWLGIGVASMKAGEWALLWVGWELGYGKEGSFSFPNVPPMADLVYEVEFIGFDETKEGKARSDMTVEERIGVAAYIGDYFMFQLFGKYRDMALAIKNPCHLNMATCLIKLNRYEEAIGQCSIVLSEDENNVKALFRRGKARAALGQIDAAKEDFLKAHKYAPEDKAIARELRLLVEHDKAVNQKQKEIYKGIFGPRPQPVPKRRNWLILIWQWLL 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi319g00036 330 SMART tpr_5 246 279 IPR019734 GO:0005515
Sebi319g00036 330 SMART tpr_5 212 245 IPR019734 GO:0005515
Sebi319g00036 330 SUPERFAMILY FKBP-like 26 174 - -
Sebi319g00036 330 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 70 168 IPR001179 GO:0003755
Sebi319g00036 330 MobiDBLite consensus disorder prediction 1 36 - -
Sebi319g00036 330 ProSiteProfiles TPR repeat profile. 246 279 IPR019734 GO:0005515
Sebi319g00036 330 Pfam Tetratricopeptide repeat 247 279 IPR013105 -
Sebi319g00036 330 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 66 165 IPR001179 GO:0003755
Sebi319g00036 330 PANTHER ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED 189 317 IPR039663 -
Sebi319g00036 330 Gene3D - 38 169 IPR046357 GO:0003755
Sebi319g00036 330 Gene3D Tetratricopeptide repeat domain 186 274 IPR011990 GO:0005515
Sebi319g00036 330 SUPERFAMILY TPR-like 213 307 IPR011990 GO:0005515
Sebi319g00036 330 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi319g00036 Sebi-Chr319 715484 718649 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi319g00036 53 309 Calmodulin-binding Proteins AT3G25230 28.421 4.82e-21 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi319g00036 - - gmx:100790587 545.043