Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi319g00005 ATGGGTAGGGGGAAGATTGAGATCAAAAGGATTGAGAATGCTAACAGCAGACAAGTTACATTCTCCAAAAGGAGAACTGGGTTGCTCAAAAAGGCTCAGGAGCTGGCCATTCTCTGCGATGCTGAGGTTGCTGTTATCATCTTCTCCAACACAGGGAAGCTGTTCGAGTTTTCGAGTTCTGGTATGAAGCGAACACTTCAAAGATACAACAAATGCATGGATTCTTCAGAGGTAGCAGTAGCAGAACATAAAACAGAGGAAGATTCTAAGATGCTGGAGATTCTTAAAGATGAAATTGCAAACCTAGAAACAAAGCAATTACAGCTGTTGGGTAAAGACCTAACAGGATTGGGCTTAAAGGAACTGCAACATCTAGAGCAGCAACTTAATGAAGGGTTATTGTCTGTCAAGGAGAGGAAGGAGGAATTACTTATGGAGCAACTGGAGCAATCAAGAGTACAGGTTGAGGAGCTTCGTTGTTTGTTTCCATTATCAGAGCATGTAGTCCCAACTTATCTTCCATTCCACCATATGGAAAGAAAGAGTGCCTTTGTAGATAATGGTGTTAAATGTCCCAACTTGGTCAGTAACTGTGCAAATGAGAAAGGAGATTCAGACACTGCATTGCATTTAGGGTGGCCAACTGATGTTCATCACAAGAGGAAGGGACCTGAGAAAGAAAACTTTTCTAATGATTCATAG 702 0.4174 MGRGKIEIKRIENANSRQVTFSKRRTGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLQRYNKCMDSSEVAVAEHKTEEDSKMLEILKDEIANLETKQLQLLGKDLTGLGLKELQHLEQQLNEGLLSVKERKEELLMEQLEQSRVQVEELRCLFPLSEHVVPTYLPFHHMERKSAFVDNGVKCPNLVSNCANEKGDSDTALHLGWPTDVHHKRKGPEKENFSNDS 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi319g00005 233 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Sebi319g00005 233 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Sebi319g00005 233 Pfam K-box region 84 158 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sebi319g00005 233 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Sebi319g00005 233 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Sebi319g00005 233 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sebi319g00005 233 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sebi319g00005 233 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sebi319g00005 233 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sebi319g00005 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Sebi319g00005 233 MobiDBLite consensus disorder prediction 209 233 - -
Sebi319g00005 233 ProSiteProfiles K-box domain profile. 85 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sebi319g00005 233 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Sebi319g00005 233 Coils Coil 85 112 - -
Sebi319g00005 233 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Sebi319g00005 233 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sebi319g00005 233 MobiDBLite consensus disorder prediction 213 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi319g00005 Sebi-Chr319 116776 120505 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi319g00005 1 233 MADS-box Gene Family AT5G13790 51.210 2.29e-75 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Sebi319g00005 K-box 2.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi319g00005 - - zju:107417456 317.39