Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi318g00058 ATGGCAATTGCAGCAACAAACTCATCATCACCCACCATGAGCCTCAGCCATAGCCACAGTCATGACGATGCTACTACCACCACTTCCGCTACCAACGAAAACAACAATAAGCTTGCAGATGATCACGAGAACGACACCGTTATGCCCGGCTTTGGCGGCTATAGGGGAGAAGGAATGGTATTTTATGTGCCTCGAGATAGAAAGTATCGGAACGGGGATCGTCCAAATCGTGTGACTACGTCTGGGTATTGGAAGGCGACAGGAGCGGATAGGATGATCCGAACCGAAAACTTCCGCTCAATTGGTCTCAAGAAAACCCTAGTTTTCTATTCTGGGAAAGCTCCTAAAGGCATCCGAACCAGTTGGATTATGAATGAGTATCGCTTGCCACAACATGAAACTGAACGATATCAAAAGGAGGAGGGATGA 429 0.4755 MAIAATNSSSPTMSLSHSHSHDDATTTTSATNENNNKLADDHENDTVMPGFGGYRGEGMVFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETERYQKEEG 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi318g00058 142 Pfam No apical meristem (NAM) protein 50 129 IPR003441 GO:0003677|GO:0006355
Sebi318g00058 142 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 59 132 - -
Sebi318g00058 142 ProSiteProfiles NAC domain profile. 1 142 IPR003441 GO:0003677|GO:0006355
Sebi318g00058 142 SUPERFAMILY NAC domain 53 136 IPR036093 GO:0003677|GO:0006355
Sebi318g00058 142 Gene3D NAC domain 14 142 IPR036093 GO:0003677|GO:0006355
Sebi318g00058 142 MobiDBLite consensus disorder prediction 1 51 - -
Sebi318g00058 142 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi318g00058 Sebi-Chr318 570571 571526 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi318g00058 48 141 NAC Transcription Factor Family AT2G02450 78.723 4.11e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi318g00058 NAM 1.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi318g00058 - - mnt:21399534 181.8