Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi318g00055 ATGAGTGAAAGAATATTAGTGATTCTGCTGCTTGTTTTCAAGTACTTGTTGATTGCGGAAGGAGAAACAGCTGATGGGGATTTGGTCACTCTTAAGTCTCTTATGGATACCTTGAAGAACACCCCTCCTAGTTGGGTGGGTTCAGATCCTTGTGATGATTGGGATGGAATTGAGTGCAAGAATTCACGTGTCACATCCATAACATTATCAACCACTGGTTTGGAAGGCCAGCTTTCTGGAGATATTGGATCACTATCTGAATTGGAGACTTTGGATCTATCTTACAACAAGGACTTGACAGGACCGCTTCCACAATCCATTGGAGAGTTGAAGAAGCTGTCAACCTTAATTCTTGTTGGTTGCAGCTTCAATGGTCCTATTCCAAACAACATAGGATATCTCCAGGAGCTCCGCTACTTATCTTTAAATTCCAATAGATTTAGTGGACAAATTCCGCATTCTATTGGTAATTTATCAAAGCTTTATTGGTTAGATTTAGCTGAAAATCAGCTTGAAGGGCCCATCCCAGTATCTAGTGACAGCCTCTCTGGTCTTGATAAGTTACTCAAAACCAAGCATTTTCATCTTGGGAAGAATAACCTCTCAGGCAGTATTCCTCCTCAACTTTTTAACTGGGAAATGTCTCTCATTCATTTGCTTTTAGAAAGCAATCAACTCACTGGCAATATTCCATCTACACTTGGGGAAGTTCAGAGTCTGGAGGTGGTGCGATTGGATAGTAATTCATTAAGTGGACCTGTACCTCCAAACATCAACAATCTTACAAATGTTCAAGATCTGTACTTGTCCAATAATAAACTTTCAGGCTCTCTGCCAAACCTTGCTGGAATGGATGTCCTCAGCAACCTGGACATGAGCAACAACAGTTTTAAGCCATTGGATTTTCCACCATGGTTTTCTACTCTCAAGTCTTTAACAACATTAAAGATGGAGAGAACACAACTTGAAGGACAGGTTCCTGCTTCTTTGTTTAGTCTTGCCAATTTACAGACTGTGGTGCTAAAACACAACAAGATAAATGGAACCTTGGATGTAGGCTCCTCCTACAGCAACCAGCTGAGACTTATTGATTTAGAGACCAATTCAATTGACGAATTTAAGCAAAAAGATGGAGTGTCAAATATCAAGATAATACTTAAAGATAACCCAATTTGTGATGAAATTGGAGCAGTGGGGAACTACTGCTCCAGTGTTCAACGTGAAGTCTCATACACAACACCAACAAATAATTGTGAAGTTGGTACCTGCAGTGCAGAACAGGTTCCTAGCCCTGATTGTGCATGTGCATATCCTTATACAGGAACCTTAACTTTCAGATTACCCTCTTTTTCAAACCTTGATAACAAAACTCACTACCAAATGCTTGAGGAGGGTCTTATGCATTCTTTTAAGTCTCATTATCTACCTGTGGATTCAGTTATGTTGAGCCATCCAACTAAGGATTCAAATCAATATCTTAAATTGAGCTTGCAAGTTTTCCCATCAGGACAAGATCATTTCAACCGATCAGGGGCTTTTAGCATTGGTTTTATGCTGAGCAACCAGACTTTTAAGCCACCTAAAGATTTTGGACCATATTATTTTATTGCAGATAAATATGAACACTTTGAAAATTCTGATGGAAGTAAATCTTCAAACTTTGGAATCATAATTGGAGCAGCAGGTGGTGCTTTAGTCTTGCTAGTGTTATTACTTTTAGCAGGTGTTTATGCTTTCCGCCAAAAGAAAAGGGCTGAGAAAGCAATTGAACAAAGCAATCCTTTTAGAGGCTGGGACATATCTGAGAGCAACAGTGACATACCTCAGTTAAAAGAAGCAAGGCGGTTTTCTTTTGAAGAGCTTAAAAAATACACCAAAAATTTTTCTCAAGCCAATGATATTGGATCTGGGGGTTTTGGAAAGGTTTATAAAGGAACCCTTCCGAATGGGCAACTGGTAGCAATAAAACGAGCGCAAAAAGAATCAATGCAGGGAAAGCTTGAGTTTAAAGCTGAGATTGAACTCCTATCAAGGGTGCACCATAAAAATCTTGTTAGCCTTCTTGGATTCTGCTTTGAGCAAGGAGAACAAATGCTGGTTTATGAGTATGTTCCAAATGGAACTTTAAAGGATACTCTCTTAGCTTCGACACTAAACGGTTTTGAGAAGTTATTAGATGTTGCCATGAAATGTGTTGAAGAGACAGGTGTTGAGAGGCCTAAAATGAGTGACGTGGTGAGAGAAATTGAAAACATATTGAAGTCAAACCCTGGGGCGAGGGATGAAGAATCACCATCAATTTCTTCCAGTTATGAAGAGGTAAGCCGAGGGAGTTCCTCCTGCCATCCTTATAGTAACGAGCTATTTTGA 2370 0.3962 MSERILVILLLVFKYLLIAEGETADGDLVTLKSLMDTLKNTPPSWVGSDPCDDWDGIECKNSRVTSITLSTTGLEGQLSGDIGSLSELETLDLSYNKDLTGPLPQSIGELKKLSTLILVGCSFNGPIPNNIGYLQELRYLSLNSNRFSGQIPHSIGNLSKLYWLDLAENQLEGPIPVSSDSLSGLDKLLKTKHFHLGKNNLSGSIPPQLFNWEMSLIHLLLESNQLTGNIPSTLGEVQSLEVVRLDSNSLSGPVPPNINNLTNVQDLYLSNNKLSGSLPNLAGMDVLSNLDMSNNSFKPLDFPPWFSTLKSLTTLKMERTQLEGQVPASLFSLANLQTVVLKHNKINGTLDVGSSYSNQLRLIDLETNSIDEFKQKDGVSNIKIILKDNPICDEIGAVGNYCSSVQREVSYTTPTNNCEVGTCSAEQVPSPDCACAYPYTGTLTFRLPSFSNLDNKTHYQMLEEGLMHSFKSHYLPVDSVMLSHPTKDSNQYLKLSLQVFPSGQDHFNRSGAFSIGFMLSNQTFKPPKDFGPYYFIADKYEHFENSDGSKSSNFGIIIGAAGGALVLLVLLLLAGVYAFRQKKRAEKAIEQSNPFRGWDISESNSDIPQLKEARRFSFEELKKYTKNFSQANDIGSGGFGKVYKGTLPNGQLVAIKRAQKESMQGKLEFKAEIELLSRVHHKNLVSLLGFCFEQGEQMLVYEYVPNGTLKDTLLASTLNGFEKLLDVAMKCVEETGVERPKMSDVVREIENILKSNPGARDEESPSISSSYEEVSRGSSSCHPYSNELF 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi318g00055 789 FunFam Leucine-rich repeat family protein 26 180 - -
Sebi318g00055 789 ProSitePatterns Protein kinases ATP-binding region signature. 634 656 IPR017441 GO:0005524
Sebi318g00055 789 PANTHER RECEPTOR-LIKE PROTEIN 55 32 713 - -
Sebi318g00055 789 FunFam Leucine-rich repeat protein kinase family protein 181 280 - -
Sebi318g00055 789 FunFam Leucine-rich repeat protein kinase family protein 596 703 - -
Sebi318g00055 789 SUPERFAMILY L domain-like 58 384 - -
Sebi318g00055 789 SUPERFAMILY Protein kinase-like (PK-like) 601 717 IPR011009 -
Sebi318g00055 789 ProSiteProfiles Protein kinase domain profile. 628 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi318g00055 789 Gene3D Phosphorylase Kinase; domain 1 598 703 - -
Sebi318g00055 789 ProSiteProfiles Leucine-rich repeat profile. 263 285 IPR001611 GO:0005515
Sebi318g00055 789 MobiDBLite consensus disorder prediction 761 789 - -
Sebi318g00055 789 Gene3D Ribonuclease Inhibitor 183 281 IPR032675 -
Sebi318g00055 789 Gene3D Ribonuclease Inhibitor 24 182 IPR032675 -
Sebi318g00055 789 MobiDBLite consensus disorder prediction 754 789 - -
Sebi318g00055 789 Pfam Protein tyrosine and serine/threonine kinase 631 716 IPR001245 GO:0004672|GO:0006468
Sebi318g00055 789 Gene3D Ribonuclease Inhibitor 282 429 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi318g00055 Sebi-Chr318 519508 524881 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi318g00055 2 713 Receptor kinase-like Gene Family AT1G79620 50.471 0.0 702
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Sebi318g00055 PK_Tyr_Ser-Thr 3.9e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi318g00055 - - gmx:100811702 1127.46