Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi318g00035 ATGAGGGTGGACCGCCATTGGAGTGAGAAGAAGCTGGAAGAGATGACGGAGAGGGATTGGCGTATCTTCAGGGAGGACTTCAACATCTCCTACAAGGGTTCCAAGATTCCTCGCCCCATGCGTAGCTGGATTGAGAGCAAGTTGAGCAATGAGCTCTTGAAGGCTGTGGAGAAGGCTGGTTACAAGACCCCATCTCCCATTCAGATGGCAGCTATTCCCCTTGGCTTGCAGCAGCGTGATGTAATTGGCATTGCTGAGACTGGTTCCGGGAAGACTGCTGCATTTGTTCTTCCCATGTTGAGTTACATCACTAGGCTTCCTCCCATGAGTGAGGAGAACGAGGCTGAGGGTCCCTATGCTGTTGTCATGGCACCCACTCGTGAGCTTGCACAGCAGATTGAGGATGAGACTGTTAAGTTTGCTCAGTATCTGGGCATCAAAGTGGTTTCCATTGTTGGTGGACAGTCCATTGAGGAGCAAGGGTTTAAGATAAGGCAAGGCTGTGAAATTGTGATTGCCACTCCCGGTCGTTTGATTGATTGCTTGGAGCGACGCTATGCTGTTCTCAACCAGTGCAATTATGTTGTTCTTGATGAGGCTGACCGTATGATTGATATGGGGTTTGAGCCACAGGTTATGGGTGTGCTGGATGCCATGCCTTCCAGCAATCTGAAACCTGAGAATGAAGATGAGGAGCTTGACGAGAAGAAGATTTACAGGACCACTTATATGTTTAGTGCCACCATGCCACCCGCCGTGGAGAGGCTTGCTAGGAAATATTTAAGGAACCCTGTTGTGGTAACCATAGGTACTGCTGGAAAAGCAACTGACTTGATCAGCCAGCATGTCATCATGATGAAGGAATCTGAGAAATTTCCTAAGCTTCAGAGATTACTTGATGAGCTTAATGACAAGACTGCAATTGTATTTGTTAACACCAAGAAGAATGCTGATATGGTTGCCAAAAATTTGGATAAGGAAGGCTATCGTGTGACTACTTTGCATGGAGGAAAATCGCAGGAGCAGAGGGAGATTAGTCTTGAAGGATTTAGGACCAAGAGATATAATGTTCTCGTAGCAACTGATGTAGCTGGACGTGGGATAGACATACCTGATGTGGCTCATGTCATCAACTATGATATGCCTGGGAATATTGAAATGTACACTCACCGTATTGGGCGTACTGGTCGTGCAGGAAAGACAGGTGTGGCTACAACCTTCCTGACTCTTCATGACACTGATGTCTTTTATGACCTCAAACAGATGCTCATTCAAAGTAATAGTCCTGTTCCACCTGAATTGGCAAGGCATGAAGCTTCAAAATTCAAGCCAGGAACTATTCCTGACAGACCACCTAGACGCAATGACACTGTTTTTGCGCATTAG 1386 0.4661 MRVDRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRSWIESKLSNELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKFPKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDKEGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLHDTDVFYDLKQMLIQSNSPVPPELARHEASKFKPGTIPDRPPRRNDTVFAH 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi318g00035 461 Pfam DEAD/DEAH box helicase 66 256 IPR011545 GO:0003676|GO:0005524
Sebi318g00035 461 Gene3D - 2 271 IPR027417 -
Sebi318g00035 461 Gene3D - 272 459 IPR027417 -
Sebi318g00035 461 MobiDBLite consensus disorder prediction 429 461 - -
Sebi318g00035 461 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 294 438 IPR001650 -
Sebi318g00035 461 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 420 IPR027417 -
Sebi318g00035 461 Pfam Helicase conserved C-terminal domain 291 399 IPR001650 -
Sebi318g00035 461 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 196 204 IPR000629 -
Sebi318g00035 461 SMART helicmild6 318 399 IPR001650 -
Sebi318g00035 461 SMART ultradead3 60 282 IPR014001 -
Sebi318g00035 461 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 72 267 IPR014001 -
Sebi318g00035 461 FunFam probable ATP-dependent RNA helicase DDX23 2 271 - -
Sebi318g00035 461 CDD DEADc_DDX23 52 268 - -
Sebi318g00035 461 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 20 438 - -
Sebi318g00035 461 Coils Coil 285 305 - -
Sebi318g00035 461 CDD SF2_C_DEAD 279 408 - -
Sebi318g00035 461 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 41 69 IPR014014 GO:0003724
Sebi318g00035 461 FunFam probable ATP-dependent RNA helicase DDX23 272 460 - -
Sebi318g00035 461 MobiDBLite consensus disorder prediction 436 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi318g00035 Sebi-Chr318 327889 329274 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi318g00035 39 421 Eukaryotic Initiation Factors Gene Family AT3G19760 31.510 7.40e-65 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi318g00035 K12858 - gmx:100792810 900.582