Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi318g00029 ATGGAAGGCTTTCATGGCTACCGCAAGCTCCCCAACACTCCCTCTCTCTCTGGAGTAGGAGCAGGAGGGTTGAGGCTATCAGTCTCGGAGATGAACATGAGGCAGCAGATAGGAGGAGGAGGAGATCAGAACAACCAATCAGAAGATCAGAATGAGTGCATGGTGAGGGAGCAAGACCGTTTCATGCCAATTGCAAATGTGATTAGGATAATGCGCAAGATCCTACCGCCACATGCCAAGATCTCTGATGATGCTAAAGAAACAATCCAAGAGTGTGTCTCTGAGTACATCAGCTTCATTACTGGCGAGGCCAATGAGCGTTGTCAGAGGGAGCAGCGCAAGACCATCACTGCAGAGGATGTCCTGTGGGCTATGAGCAAGCTTGGCTTTGATGATTACATTGAACCTCTCACAATGTACCTTCACCGATACCGTGAGCTGGAGGGTGACCGTACCTCCATGAGGGCTGAACCACTCGGGAAGAGGACTGTCGAGTATGGAACTCTTGGTGCTGCTTTTGTCCCACCATTTCATCATCACATTGGCCATCCAAATGGGTATTTTGGTGGTGCAGCCATGGGGACTTACATGAGGGACAATGCACCAAATGCTGCTGCTGCTGCAGGGTCATCTCATCAGGCTGCACTCACAAATGCTGAACCAAATGGTCAATATAAATGA 681 0.4978 MEGFHGYRKLPNTPSLSGVGAGGLRLSVSEMNMRQQIGGGGDQNNQSEDQNECMVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYRELEGDRTSMRAEPLGKRTVEYGTLGAAFVPPFHHHIGHPNGYFGGAAMGTYMRDNAPNAAAAAGSSHQAALTNAEPNGQYK 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi318g00029 226 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Sebi318g00029 226 PRINTS CCAAT-binding transcription factor subunit A signature 127 145 - -
Sebi318g00029 226 PRINTS CCAAT-binding transcription factor subunit A signature 108 126 - -
Sebi318g00029 226 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 42 202 IPR027113 GO:0001228|GO:0006355|GO:0016602
Sebi318g00029 226 SUPERFAMILY Histone-fold 58 155 IPR009072 GO:0046982
Sebi318g00029 226 ProSitePatterns NF-YB/HAP3 subunit signature. 92 108 IPR003956 GO:0005634|GO:0006355|GO:0043565
Sebi318g00029 226 FunFam Nuclear transcription factor Y subunit B-6 50 166 - -
Sebi318g00029 226 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 61 125 IPR003958 -
Sebi318g00029 226 Gene3D Histone, subunit A 47 166 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi318g00029 Sebi-Chr318 272801 274827 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi318g00029 3 190 CCAAT-HAP3 Transcription Factor Family AT5G47670 61.137 5.64e-75 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Sebi318g00029 CBFD_NFYB_HMF 6.5e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi318g00029 K08065 - gmx:100194424 310.071