Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi316g00022 ATGGCTATGGTTTCTGTTGCTTTCCACAAGATCAATAGTATCTGTGAGAGGAGGCAAAATTGGCGTTTGAGAGTTAAGCTGGTTAGGGTATGGAGTATGTGTGCTGTTGCTACCCCAAGTGACCCATACGCAATGCAGATGGTGTTTGTAGATGAAGAGGGAGGGAAGATAGAGGCTATAGTTCAGAGGCAATTTATGAAGAAATTTTCACAGTGCCTGGTGGAGGGAGAGGTGTACAAGATATCCAACTTTGGTGTCTCTTCTAATGGAGGCAAGTTTAGGGCTTCTGGTCATGACTACAAGCTGTCTTTCACAGCATGTACTCAAGTGACAAAGTGCGTTGGAGTATCTATACCTGGGTTAGGGCTCTCTCTTTTGAAGACATCTGATCTAAAGAAAACGAGGGGCCATTCGGTCTACCTTGTGGATTTTATGGGAGTGGTAACTGTTGTCTCAGAGGAGCTTAATATCAACAAGGAGGGAAGGAAGACACGTTTAATGTTGATTGACTTAGTTGACGAATTTGGTAAGATCCGCTTTGCTGTGTTTGGGGATTTCATTAATGTTGTTATGGAGTTCCTTGCTCTTGAAGATCATGGGTTTCCTGTTGTTATAATCCAATTCGCAAGGGTAAACCTCTATAAAGGTGAGGTTGGGATTCAAAATGTAATGAATGCAACAAAGATTTTGTGGAATCCTCATATTCCATTGGCAGTGGAATTTAAAAATAGCCTAGCTGTCCATGAAATTGAAACTAACGTTTCTATCTCAACTATCACTGATCGGCGCCAAGCTCCATCCATGAGGGATGAGTTTCTTAAACTATATCCCAAGAAATCCATTGGGCAACTTTATGATATGCTTGAGGTGTTGTTCTGCATATCTGTATTCTGTTTGTTTTGTGGCTTGATATTTTCCTTGGGTGGGATGAGATGCTCATTGTGTGCTCACCCTTTTTTTCCACAGGAAGGTCACTACATAATATTAGCCACAGTGAGTGAGATTGTTGATGACTTCAAGTGGTGGTACATGGCATGTTCCTGCATGAAAGGTGTCTCTTTTGTTGAAGGACTCCCATTTTGTGAAGATTGTAACAGATATGTTTTTGATATGACCCCAAGGTACAAAGTCAAGCTGTTGGTGTGTGATGGGAATGATAATGCATTTTTCATTCTTTGGGATTTAGACTGTTATTATCTTGTGAATAAAACCTGCCGACAGATGCTGGATGATATTGAGGGTCAGCCTAAGGGGCTTTTACCTGAAGAAATTAGGAACTTAGTGGGGAAGGAGATGCTTTTTCGAATAGAAAATAGCCACGAAGATTTGCTTAGCTTTTCTGACACTTATAAGATTAAGAAGGTGTGCTGTGATGTGGATATAGTTGCTCAATATAAAGAAGAAGTTGCTGATGAAACTCCCCTAAAGTTGAAGTTCGCTCCTGCATTCCCCAAGTTAGCCGAGGCTGATGCAAATGGTGAAGGGCTTGAACTGTCCACCTGCTGCAAAACTATTGCAACTGAGCTTGAGATCACCCCTCCCTCATGTGTTACTTCTTCAGCCAATGGGGAGGAAAGTGGGAGCCTTGGTAAAAGGGATGTTGAGGACCAAGATGAAGCTCCCCTAAAGAGGAAGAAGAGGTCCAGGGTTCGAGCAGTTAAGGTGGAGAGAAACTAA 1677 0.4216 MAMVSVAFHKINSICERRQNWRLRVKLVRVWSMCAVATPSDPYAMQMVFVDEEGGKIEAIVQRQFMKKFSQCLVEGEVYKISNFGVSSNGGKFRASGHDYKLSFTACTQVTKCVGVSIPGLGLSLLKTSDLKKTRGHSVYLVDFMGVVTVVSEELNINKEGRKTRLMLIDLVDEFGKIRFAVFGDFINVVMEFLALEDHGFPVVIIQFARVNLYKGEVGIQNVMNATKILWNPHIPLAVEFKNSLAVHEIETNVSISTITDRRQAPSMRDEFLKLYPKKSIGQLYDMLEVLFCISVFCLFCGLIFSLGGMRCSLCAHPFFPQEGHYIILATVSEIVDDFKWWYMACSCMKGVSFVEGLPFCEDCNRYVFDMTPRYKVKLLVCDGNDNAFFILWDLDCYYLVNKTCRQMLDDIEGQPKGLLPEEIRNLVGKEMLFRIENSHEDLLSFSDTYKIKKVCCDVDIVAQYKEEVADETPLKLKFAPAFPKLAEADANGEGLELSTCCKTIATELEITPPSCVTSSANGEESGSLGKRDVEDQDEAPLKRKKRSRVRAVKVERN 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi316g00022 558 Gene3D - 318 471 IPR012340 -
Sebi316g00022 558 SUPERFAMILY Nucleic acid-binding proteins 7 116 IPR012340 -
Sebi316g00022 558 MobiDBLite consensus disorder prediction 528 545 - -
Sebi316g00022 558 SUPERFAMILY Nucleic acid-binding proteins 125 248 IPR012340 -
Sebi316g00022 558 CDD RPA1_DBD_C 326 471 IPR047192 -
Sebi316g00022 558 Pfam Replication factor-A C terminal domain 327 466 IPR013955 -
Sebi316g00022 558 SUPERFAMILY Nucleic acid-binding proteins 324 459 IPR012340 -
Sebi316g00022 558 CDD RPA1_DBD_B_like 143 245 - -
Sebi316g00022 558 Gene3D - 7 113 IPR012340 -
Sebi316g00022 558 MobiDBLite consensus disorder prediction 514 558 - -
Sebi316g00022 558 Pfam Domain of unknown function DUF223 47 114 IPR003871 -
Sebi316g00022 558 CDD RPA1_DBD_A_like 22 110 - -
Sebi316g00022 558 Gene3D - 117 255 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi316g00022 Sebi-Chr316 702803 705293 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi316g00022 1 445 Core DNA Replication Machinery Family AT5G08020 21.957 2.04e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi316g00022 - - lja:Lj6g3v0884310.1 339.347