Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi316g00020 ATGGCCGTGAATCTGACACAAGGGGCGATCGAGACTACGTGCAGCGACAACTTCTCTTCGGAGGAGTTGCAGCCGGTACTGCAGATTATCGAATTGAAGTTGGTGCAGTCGCAGCAGAACAGCGCCGTCGAGAAGTACCGTCTCATGGTCTCTGACGGTTCGTATTATCAGCAAGGGATGCTCGCCACGATGAAGAACGAGTTGGTCCGTTCTCGAAGCTTGCAGAAAGGTTCCGTTGTTAGGCTCACTCGGTTCATCTGCAACGTTGTCCAAGGCCGCAATGAGATGAATCAATCTCCTTATGTTTTCCGTGTCACGCTTTCGTAG 327 0.5168 MAVNLTQGAIETTCSDNFSSEELQPVLQIIELKLVQSQQNSAVEKYRLMVSDGSYYQQGMLATMKNELVRSRSLQKGSVVRLTRFICNVVQGRNEMNQSPYVFRVTLS 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi316g00020 108 Pfam Replication factor-A protein 1, N-terminal domain 5 93 IPR007199 GO:0003677|GO:0005634|GO:0006260
Sebi316g00020 108 FunFam Replication protein A subunit 4 96 - -
Sebi316g00020 108 PANTHER RPA-RELATED PROTEIN RADX 5 93 IPR040893 GO:0003697
Sebi316g00020 108 Gene3D - 3 103 IPR012340 -
Sebi316g00020 108 CDD RPA1N 8 94 IPR007199 GO:0003677|GO:0005634|GO:0006260
Sebi316g00020 108 SUPERFAMILY Nucleic acid-binding proteins 1 93 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi316g00020 Sebi-Chr316 642979 643603 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi316g00020 1 93 Core DNA Replication Machinery Family AT4G19130 45.745 5.16e-23 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi316g00020 K07466 - gmx:100778597 129.798