Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi316g00017 ATGTCTGCTAAAGTCCCTACTGCGGTCAGACTAGTGAAGCAAGCGTTAATGGAGGATAAGTGTGTAGTCATAGGTCTGCAGAGTACGGGTGAAGCAAGAACAGAGGAAGCTGTTTCAAAATATGGTTCTGAACTTGATGACTTTGTTTCTGGACCTCGTGAATTGCTGCTAAAATTTGTTGAAGAAAATTTTCCATTGCCTGAAAAGCCTGAACATCTCCCAGGAGAGGATGGTGTGAAGGAGCTTCAAAGGAAGAGGCACTTGGCAAGTCCTGATGTTTCAGTAAAAGGAAGAGACAGAAAAGTAGCTAAGTTGCAGCATCCTAGTGATGTTGAAAGTGATGAAGAATCTGAAACTGCTTCTGCTCTTGAATCTTCTGATTCTGATTACGGACCAGAAGGGGATGAAAGTGCTGCCTCTGCTCTTGAATCTACTGACTCTGATTATGATGAGTTTCAGACATGTGAAATTTGCAGTACTGAAGAGGAAAGTGAAAACTTGTTGCAATGCTCCTGCTGTGGTAAATCATTCCATCAATCATGCTTGGTTCCCCAAATTGGCAATGTAGTTCCCAAGGAATGGTCGTGTCATTTGTGCAAGGAAAAAACAGATGAATTTCTCCATGGAAGACATGCCTACATAACTGAGCTCCAAAAGAGGTATGACATAGCCTTTGAGTGCAAGACAAAAATATTAGAGATGATTCATGCTTTGGATCTTCCAAATAATCCATTGGATGATATTATTGACCAGTTAGGAGGCCCTGACAAAGTTGCAGAAATAACAGGAAGGAAAGGGATGCTTGTGAGGGCCCCTAGTGGAAAGGGTGTGACTTATTGGGCTCGTAATATAAAAGATGTCCCTATGGAAATGGTCAACATGCATGAAAAGCAGCTCTTTATGGATGCAAAGAAGTTAGTAGCGATTATCTCTGAAGCTGGATCAGCTGGTGTTTCATTGCAGGCAGACAGAAGAGTGAGAAATCAGAAAAGAAGGGTTCATTTAACTCTTGAACTTCCTTGGAGTGCGGACCGAGCAATTCAGCAGTTTGGAAGAACTCATCGGTCAAATCAAGCTTCAGCACCAGAATACAGGTTTCTATTTACTAACCTTGGCGGAGAACGCCGATTCGCATCAGTTGTTGCGAAGAGATTAGAATCTCTTGGTGCTTTGACTCAGGGGGACCGCAGGGCTGGACCTTCATTAAGTGCTTATAATTATGATAGTCCTTATGGAAGGAGGGCTCTGATGATTCTGTACAGAGGAATAATGGAGCAGGATTCTCTTCCCATTGTACCTCCAGGATGCTTATCTGACAGACCAGATACAACCCAAGGTTTTATTATGCGGGCAAAATCTGCTCTTGCATCTGTTGGAATTGTTAGGGACACCATTCTTGGAGGTGATGGAGATCCTGGAAGGTTATCTGGTCACATTACTGATTCAGATATGTATGATATTGGGCGATTCCTCAACCGGCTTTTGGGATTGACTCCTGAAACTCAAAATGGGCTATTTGAGTTATTTGGGAATATCTTGGATCTTCTTATTCAAAATGCTCGCATTGAAGGTAACCTTGACACAGGCATTGTTGACTTGAAAGCTAATGCCATTGAACTGAAAGGGACTCCAAAGACAGTCCATGTTGATCAAATGAGTGGGGCTTCAACTGTTCTATTCACATTCATCTTGGATCGTGGGACCTCATGGGAGTTGGCAAATACCATGCTGAATGAGAAGCAGAAGGATGGGCTTGGTTCATCCAGTGATGGTTTCTACAAGTCCAAGAGGGAATGGCTGGGAAGACCTCGTTTCATTTTGGCACTTGAAAGCCTTTCCTTTTATTCTTCACCACTCAGCCATCTTCTTGCTATAATGTCAAGGGAAGAGGAAGTTGTGAACCCAACCCCAGAAACAGGGAATACCCAATCCCAGCAACCTGGAGAACTGCAGAATATTCATTCTGCATATAGACTAAATGGAAGAAATTATTTGAAGTGGGCCCAACTTGTTCGTACAGTGTTGAAGGGAAAGGGGAAGTTGAGTCACCTGACGGAGTCTGGACCTAAACAGGAGGATCCCAAGTTTACTACATGGGATGAGGAAGATTCAATGATCATGGCGTGGCTGTGGAATTCAATGATTCCAGAAATCAGCGACACCTGCATGTTCCTTAATTCGGCAAAAGAGATTTGGGATGCTGTAGAGCAAACCTACTCTAAAGCCAAAGATGCTGCTCAAGTATATGAAGTAAAGGTGAAAACTTTGGCAGCAAAACAAGGGAACAAGACTGTTACAGAATATGCCAATCAGCTTAAATCATTATGGATGGAGCTAGACCATTATAGAGTCATAAAAGGCAAATGTACTGAAGATTCAGCACTTCTCAAGGAGTATATCGAACAAGACAGAGTTTATGATTTCCTTGTTGGTTTGAATCCTGAATTTGATCAAGTTAGGATTCAAATATTGGGGAAGCATAAGGTACCATGCTTCAATGAAGTGGTGGCTATTGTGAGAAGTGAAGAAAGTAGAAGGGGTCTCATGTTAGAGAGTCCAGCAGTAGAGAACTCAGCAATGGTGGCTGACCATAAAGGAGATCAGACTTTGGCCATGGTAGCCGAACAAAAGAAAGGAGGATCAGCAAATGTGGAGAAGAAAAGTGATGGTCTCTGGTGTACCTACTGCAATAAGCCTCGTCATACCCGAGAGAAGTGCTGGAAGTTGTATGGGAAGCCTTTAAATCGAGATCGAGAAGGGGGACACAGAGGAGGCTCCTCAAGGAAAGGAGGACAAGTTTATGTTGCTGCTGGAACAAATGAAGAAAATAAACCAGAAGTTGCTGACCATCTTAACCAAGAGGAGATAGAAAGGGTGAGAACCTTTCTTAGTAAGCTGGAAAAACCTCCAGGTGTGTGTTCTTTGGCATACTCAGACTTGACAGACTTGATATTTGAACCTAAACTAGATCAAATTGAAGCTGTAACAAGTGAAACAAGTCAAGGAAGTGAAGCTGGTCAAGGAATTGGTCAAGAAAAGGAAGCTGGTCAAGAAAGTGAAATTAATTGTGAAGCTGATCAAGGAGATGTTGAAGCTGGAAAATTTGGTAAGAAGCTGGTGTACTCAAGGAAGACTAAGGCCATTCCAGGATCAAGCCATGTTCAAGAATCCAACTCGACTCCACAAAAAGAGAAAAGGGACAAGAAAATGCACCAAACAGCCACTCTACCCTCTCTCAAATTACCTGTCCTTTGA 3255 0.4267 MSAKVPTAVRLVKQALMEDKCVVIGLQSTGEARTEEAVSKYGSELDDFVSGPRELLLKFVEENFPLPEKPEHLPGEDGVKELQRKRHLASPDVSVKGRDRKVAKLQHPSDVESDEESETASALESSDSDYGPEGDESAASALESTDSDYDEFQTCEICSTEEESENLLQCSCCGKSFHQSCLVPQIGNVVPKEWSCHLCKEKTDEFLHGRHAYITELQKRYDIAFECKTKILEMIHALDLPNNPLDDIIDQLGGPDKVAEITGRKGMLVRAPSGKGVTYWARNIKDVPMEMVNMHEKQLFMDAKKLVAIISEAGSAGVSLQADRRVRNQKRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYRFLFTNLGGERRFASVVAKRLESLGALTQGDRRAGPSLSAYNYDSPYGRRALMILYRGIMEQDSLPIVPPGCLSDRPDTTQGFIMRAKSALASVGIVRDTILGGDGDPGRLSGHITDSDMYDIGRFLNRLLGLTPETQNGLFELFGNILDLLIQNARIEGNLDTGIVDLKANAIELKGTPKTVHVDQMSGASTVLFTFILDRGTSWELANTMLNEKQKDGLGSSSDGFYKSKREWLGRPRFILALESLSFYSSPLSHLLAIMSREEEVVNPTPETGNTQSQQPGELQNIHSAYRLNGRNYLKWAQLVRTVLKGKGKLSHLTESGPKQEDPKFTTWDEEDSMIMAWLWNSMIPEISDTCMFLNSAKEIWDAVEQTYSKAKDAAQVYEVKVKTLAAKQGNKTVTEYANQLKSLWMELDHYRVIKGKCTEDSALLKEYIEQDRVYDFLVGLNPEFDQVRIQILGKHKVPCFNEVVAIVRSEESRRGLMLESPAVENSAMVADHKGDQTLAMVAEQKKGGSANVEKKSDGLWCTYCNKPRHTREKCWKLYGKPLNRDREGGHRGGSSRKGGQVYVAAGTNEENKPEVADHLNQEEIERVRTFLSKLEKPPGVCSLAYSDLTDLIFEPKLDQIEAVTSETSQGSEAGQGIGQEKEAGQESEINCEADQGDVEAGKFGKKLVYSRKTKAIPGSSHVQESNSTPQKEKRDKKMHQTATLPSLKLPVL 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi316g00017 1084 ProSiteProfiles Zinc finger PHD-type profile. 152 202 IPR019787 -
Sebi316g00017 1084 MobiDBLite consensus disorder prediction 1059 1073 - -
Sebi316g00017 1084 MobiDBLite consensus disorder prediction 1046 1084 - -
Sebi316g00017 1084 MobiDBLite consensus disorder prediction 996 1028 - -
Sebi316g00017 1084 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 298 403 IPR027417 -
Sebi316g00017 1084 Pfam PHD-finger 155 202 IPR019787 -
Sebi316g00017 1084 ProSitePatterns Zinc finger PHD-type signature. 155 199 IPR019786 -
Sebi316g00017 1084 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 210 IPR013083 -
Sebi316g00017 1084 PANTHER STRAWBERRY NOTCH-RELATED 1 613 IPR026741 GO:0006355
Sebi316g00017 1084 MobiDBLite consensus disorder prediction 84 114 - -
Sebi316g00017 1084 SMART PHD_3 154 200 IPR001965 -
Sebi316g00017 1084 MobiDBLite consensus disorder prediction 84 145 - -
Sebi316g00017 1084 Pfam C-terminal domain on Strawberry notch homologue 243 532 IPR026937 -
Sebi316g00017 1084 SUPERFAMILY FYVE/PHD zinc finger 144 205 IPR011011 -
Sebi316g00017 1084 ProSiteProfiles Zinc finger RING-type profile. 155 200 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi316g00017 Sebi-Chr316 601206 613350 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi316g00017 Helicase_C_4 9.4e-105 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi316g00017 K26273 - gmx:100808670 927.932