Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi315g00052 ATGGATTCCAAGAAGCTACGAAGAAAACCCAAGCTCGAGCGCCGTAATGCCCTCAAGTACTTTGAGTACGATGCTGGATCGTCTTCCTCTTCTCTCGATGACACTTCCTCTGGTTCGCTCTACACTCGTTCCATGGAGATCTACGACCGCACCAGCTTCCGTATTGAGGGAATCGAAGGCGAGTTCGATCGAATTTGCAGGAGTTTGGGGCTGTCGGGGCCAGAAGACTTTGCTATTCCCGCCGCCGCATGGGAGGCCATGAAGGTTCGATCCTCTTCTGATATTCTTCCGAGGTTGAAGCGCAATGAGATGAATCTTCCGGAGAAGGAAGAGCCCGAGGCAAACGAGGAGAGCAACGTAGCAGAGAAAGATGAATTGAGCGAAGATGAGGTTAGGGTTAGTGTCAGAGACGTTGATGATTCGAGTCCCGCTGAGACTAGCGGGTGTTGCGCTGAAAGTGGTGGTGGAGGTATTAATGGTGTTCGTCCTCCGATGCTTAAGCCACCACCGGGGATGAGGGTTCCGATTGCTGATAACACTTGCTCCACTTGGGACCTTCTGAGGGATTTAGCCCCGCAAGGTGAAGAAGGGCTTTTTGACGAGGAGCGGGAATTAACGGAGAAAGAAGAAGGGGAAGTTGATAGGGCTAGTCCGAAGAAAGAAGAAGAAGATGGGGCGGATAATGCAGCAAGGATTGCAGAGATTGTTGCCGGGCTTTCAGAATCGTGTTCGTTTACTACATCGAATGAAGATGATTCTTCTAGCACTGCCACGGACCCAAGGTCCAATAATGTATCTCCTAATGGGAGAATAAAACGTGTTATTACCCCTAGCAGCTGGCAAAAGGGTGAGTTTTTGGGGGGTGGCTCCTTTGGGTCCGTCTATGAAGGAATTTCTGACGATGGATTCTTTTTTGCGGTAAAAGAAGTTTCACTGCTTGATCAAGGGAGTCAGGGAAAACAAAGTGTCTATCAACTGGAGCAGGAAATTGCACTTTTGAGCCAATTTGAACATGAAAATATAGTTCAATACTATGGCACTCAAATGGATGAATCAAAGCTGTATATCTTTATTGAGCTTGTAACCAAAGGTTCCCTTAGAAACCTCTATCAGAAGTATACTCTTCGAGATTCCCAAGTATCTGCCTATACAAGACAGATTCTGCATGGTTTGAAGTATCTTCATGACCAAAATGTGATTCACAGGGATATTAAATGTGCAAATATATTGGTGGATGCAAATGGATCTGTCAAGCTTGCAGATTTTGGATTAGCAAAGGCAACCAAATTGAATGATGTTAAATCATGCAAGGGGACAGCATTTTGGATGGCCCCTGAGGTTGTGAAGGGAAGGAACCAAGGTTACGGGCTTCCAGCTGATATGTGGAGTCTGGGATGCACTGTGCTTGAGATGCTCACAGGCCAAATTCCATACTCTGATTTTGAATGTATGCAGGCCCTATTTAGAATTGGAAAGGGTGAGCGACCTCCTATTCCTGACTCTCTTTCAAGAGATGCAAGGGATTTTATCCTGCAGTGCCTTCAAGTTAATCCGGGTGATCGTCCCACTGCTGGTCAACTCTTAAACCATCCATTTGTCCAAAGGCCAGTTTCCCAGTCCTCTGGTTCCTCATTTCCTTACATTCGTGGCAGAAAGAGTTAA 1662 0.4651 MDSKKLRRKPKLERRNALKYFEYDAGSSSSSLDDTSSGSLYTRSMEIYDRTSFRIEGIEGEFDRICRSLGLSGPEDFAIPAAAWEAMKVRSSSDILPRLKRNEMNLPEKEEPEANEESNVAEKDELSEDEVRVSVRDVDDSSPAETSGCCAESGGGGINGVRPPMLKPPPGMRVPIADNTCSTWDLLRDLAPQGEEGLFDEERELTEKEEGEVDRASPKKEEEDGADNAARIAEIVAGLSESCSFTTSNEDDSSSTATDPRSNNVSPNGRIKRVITPSSWQKGEFLGGGSFGSVYEGISDDGFFFAVKEVSLLDQGSQGKQSVYQLEQEIALLSQFEHENIVQYYGTQMDESKLYIFIELVTKGSLRNLYQKYTLRDSQVSAYTRQILHGLKYLHDQNVIHRDIKCANILVDANGSVKLADFGLAKATKLNDVKSCKGTAFWMAPEVVKGRNQGYGLPADMWSLGCTVLEMLTGQIPYSDFECMQALFRIGKGERPPIPDSLSRDARDFILQCLQVNPGDRPTAGQLLNHPFVQRPVSQSSGSSFPYIRGRKS 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi315g00052 553 ProSiteProfiles Protein kinase domain profile. 280 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi315g00052 553 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 134 541 - -
Sebi315g00052 553 SMART serkin_6 280 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi315g00052 553 FunFam Mitogen-activated protein kinase 1, putative, expressed 278 545 - -
Sebi315g00052 553 ProSitePatterns Protein kinases ATP-binding region signature. 286 308 IPR017441 GO:0005524
Sebi315g00052 553 Pfam Protein kinase domain 281 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi315g00052 553 ProSitePatterns Serine/Threonine protein kinases active-site signature. 399 411 IPR008271 GO:0004672|GO:0006468
Sebi315g00052 553 MobiDBLite consensus disorder prediction 100 170 - -
Sebi315g00052 553 MobiDBLite consensus disorder prediction 208 227 - -
Sebi315g00052 553 MobiDBLite consensus disorder prediction 197 227 - -
Sebi315g00052 553 SUPERFAMILY Protein kinase-like (PK-like) 269 537 IPR011009 -
Sebi315g00052 553 MobiDBLite consensus disorder prediction 243 270 - -
Sebi315g00052 553 Gene3D Transferase(Phosphotransferase) domain 1 278 546 - -
Sebi315g00052 553 MobiDBLite consensus disorder prediction 100 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi315g00052 Sebi-Chr315 820914 833665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi315g00052 11 537 MAP Kinase Kinase Kinase AT4G08500 51.641 4.96e-176 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Sebi315g00052 Pkinase 1.9e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi315g00052 K13414 - gmx:100819999 840.491