Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi315g00041 ATGGCGGTTTTGTCTCTGAATTCACTGCCTTTAGGGTTCCGATTCCGACCTACAGATGAGGAACTCATCGATTACTACCTGCGACAGAAGATCAATGGCAATGGTGAAGAAGTTTGGGTTATCAGAGAAATTGATGTCTGCAAGTGGGAACCCTGGGATTTGCCTGATTTGTCAGTGATAAGGAACAAGGATCCAGAGTGGTTCTTCTTCTGTCCACAGGACCGTAAGTATCCAAATGGGCATAGATTGAACAGAGCAACAAATCATGGGTATTGGAAGGCAACAGGCAAGGATCGTAAAATCAAGTCTGGGTCTATCTTGATTGGAATGAAGAAGACTTTAGTCTTCTATAATGGTCGTGCACCAAAAGGGAAGAGGACTAATTGGGTTATGCATGAGTATAGGCCTACCCTGAAGGAGCTTGATGGTACCAATCCTGGACAGACTACTTCAATTCCTATGGCTGCCAATTACTCTCCAGAAGAAATACAATCTGATTCAGCTCTTATTGCAGTGTCCCCATCACAGGTTACAGAAGATGATAAGCATCAAGCAATTATCCCCGAGATCTCTGAAGAAACAATATCCAACATAGTAACCCCGGTTGATTGCTATAGTGACAGATATGATGCTCAAAATCAAATTGTAAAACCACCTGCGGAGGAGGATCAGCCGTTGAACTTTGACATATTTGATGACCCAAGTTACAATCTCTTAGATGACAAATTATTTTCCCCAGTACTTGTGCATATTCCACAAGAATTTCATTATCAAGCAAACAATGAATCAGATGGTCGATGTGCACTTCAATATGGTACAAATGAACCAAATATTTCAGACCTTTTTAATTGGGAGCAACTCTCCTATGAGGAGCCCGGTTGTCAACAGCAGAACTTCCCCTTGTTTAATGTTAAGGATAGTGGATCGGGCAGTGACTCAGATGTGGAAGTAGCCAATATGACTTGTATGCAAGCTGCTTATTCTGAGGCAATTGACAGAAGAATTCCTTTGGTGACAACACCAGAATTTTGCAGCACCATTGGAATCCCCTTTAACCATAGTGGTGATGAGCAGAAGATCAATGTTGGGTTATTTCAAAATAATGCCCAGATGGCCTTTTCATCTGATGTCAGTATGGGCCAAGTGTACAATGTGGTCAATGATTATGAGCAACCAAGAAACTATAATATAGCTGCTGGTGATGAAATTGGAATCATAAGAAGGCCTCGACCGGCACAAAATGAACATCTGAACACAAACTCAACGCAAGGTATTGCAAACAGGAGAATTCGTTTGTTAAAGAGAGCACATGGTTCAAATAAGATGGGGAAAGATCGGAGTTGTGCACAAGAAAAGCATAATTCAAAACCAGTCATTGCAGTGGACAAGAAAGCTTCAGAACATCATGTTGCAGATGAAAGTGCTAGTCTTACTAATTATGTGAATGAACTGCAGAAGACACCTGAGTCAACCAACAATAGAAAGATTTCTCAACAAGTTGCAAATGCAGTTGGTGTATAA 1521 0.4116 MAVLSLNSLPLGFRFRPTDEELIDYYLRQKINGNGEEVWVIREIDVCKWEPWDLPDLSVIRNKDPEWFFFCPQDRKYPNGHRLNRATNHGYWKATGKDRKIKSGSILIGMKKTLVFYNGRAPKGKRTNWVMHEYRPTLKELDGTNPGQTTSIPMAANYSPEEIQSDSALIAVSPSQVTEDDKHQAIIPEISEETISNIVTPVDCYSDRYDAQNQIVKPPAEEDQPLNFDIFDDPSYNLLDDKLFSPVLVHIPQEFHYQANNESDGRCALQYGTNEPNISDLFNWEQLSYEEPGCQQQNFPLFNVKDSGSGSDSDVEVANMTCMQAAYSEAIDRRIPLVTTPEFCSTIGIPFNHSGDEQKINVGLFQNNAQMAFSSDVSMGQVYNVVNDYEQPRNYNIAAGDEIGIIRRPRPAQNEHLNTNSTQGIANRRIRLLKRAHGSNKMGKDRSCAQEKHNSKPVIAVDKKASEHHVADESASLTNYVNELQKTPESTNNRKISQQVANAVGV 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi315g00041 506 ProSiteProfiles NAC domain profile. 9 175 IPR003441 GO:0003677|GO:0006355
Sebi315g00041 506 Gene3D NAC domain 18 170 IPR036093 GO:0003677|GO:0006355
Sebi315g00041 506 SUPERFAMILY NAC domain 4 141 IPR036093 GO:0003677|GO:0006355
Sebi315g00041 506 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 144 - -
Sebi315g00041 506 FunFam Nac domain-containing protein 86 18 154 - -
Sebi315g00041 506 Pfam No apical meristem (NAM) protein 10 135 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi315g00041 Sebi-Chr315 611804 615772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi315g00041 1 477 NAC Transcription Factor Family AT4G35580 38.000 3.74e-85 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi315g00041 NAM 4.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi315g00041 - - gmx:100777071 712.22