Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi315g00018 ATGGCAGAAGAAGAAGATGGGCATGATGATGAGCCCAAGAAAAACGTGGTCAGAACATTGCCATTCTTTAAACTGTTGAGCTATGCTGACTTAGTGGATTGGATTCTGATGGGTTTGGGAGTTGTAGGCTCCATTGTGCATGGTATGGCACTTCCTGTTGGGTACCTGTTGTTAGGGAAAGCTCTTAATGCTTTTGGGGACAATATTAATGACCAAGATGCCATGGTCGATGCTCTTAAACAAGTTGTTCCATTTGTGTGGTACATGGCCATAGCCACATTTCCTGCTGGGGTACTTGAAATTGGTTGTTGGATGTATACAAGTGAAAGACAGTTATCACGCCTAAGATTAGCATATCTAAGAGCAGTCCTGAGCCAAGAGATAGGGGCTTTTGATACAGAACTAACAGGTGGAAAAGTCATCACTGGAATAAGCAAGCACATGAGTGTCATACAAGATGCCATTGGTGAGAAGCTGGGTCACTTCACCTCTAGCTGTGCAACTTTCTTTGCTGGAATTGTGATTGCTACCATATGTTGTTGGGAAGTGGCACTTCTGTGTTTAGTGGTTGTCCCGCTTATTCTTATAATTGGGGCAACATACACCAAGAAAATGAACACCATATCAACCACCAAATTGATTTACCATTCTGAAGCTACATCTATGATAGAACAGACAATAGCACATATTAAAACAGTATATGCTTTTGTTGGAGAGAGCACTGCCATCAAATCCTTCACAGAGAACATGGATAAACAGTACATTATAAGCAAAGGGGAGGCACTTGTGAAGGGAGTTGGAACAGGGATGTTTCAAACTGTGAGTTTCTGTTCTTGGGCTCTCATCATATGGGTTGGAGCAGTTGTGGTCAGAGCCGGGAGGGCAAAGGGAGGAGACATAATAGCTGCAGTGATGAGTATTCTTTTTGGTGCTATATCTCTCACATATGCAGCACCAGACATGCAAATATTCAATCAGGCAAAGGCTGCAGGATATGAGGTTTTCCAAATGATCCAAAGAAAGCCACTAATAAAAAATGAACCAAAAGGGAAGATGCCTAGGAAAATTAAAGGTGACATTGAGCTACGAGATGTCTACTTTTCCTACCCATCAAGGCCAGAGAAACCTATCCTTCAAGGACTGTCCTTGTCAATTCCAGCTGGAAAGACAGTAGCACTAGTTGGTACCAGCGGGTGTGGAAAGAGCACTGTTATTTCCCTGGTTACCAGATTTTATGACCCCCTGAGAGGAGAAATTTTTATTGATGGTCACAAAATCAAGGATCTAGATCTGAAGTTTCTGCGAAGAAATATAGGGGTTGTTTCCCAAGAACCATCACTCTTTGCAGGCACCATCAAGGATAACTTGAAGCTGGGAAAAATGGATGCAAATGACGAAGAGATACAGAAGGCAACAGTAATGTCAAATGCACACACTTTCATATCACAGCTTCCTAATCAGTACCTAACAGAGGTAGGACAAAGGGGAGTCCAATTATCAGGAGGTCAGAAACAGAGAATTGCAATAGCAAGAGCCATTCTGAAAAATCCTCCCATCCTTTTGCTTGATGAGGCCACTAGTGCCCTTGATACAGAGTCAGAAAAGCTGGTTCAAGAAGCACTTGAGACAGCTATGCAGGGAAGGACTGTCATCTTGATTGCACATAGGCTCTCAACGGTTGTAAATGCAGACATGATTGCTGTAGTGGAAAATGGACAAGTTGTAGAGACAGGAACACACCAGAGTTTGTTAAACACAAGCAAATTCTATAGTACGTTATTCAGCATGCAGAACCTTGAAAAACCAGTTCCAGAATCCAGAACTACAATTTCCAAAAATAAAAGTGCCCGCCAAGAAGATATTATTCCTGATGAAATTAGACCACCACAAGAGACCCAGAAAGAGGTCCAAAGAACTCTCCCTGAGCATTCTGTACTAAAGGAACAGAACAAGACAAGCACAAGAGAAAGAAGTATATTTTTCAGAATTTGGTTTGATTTAAAAAAGGAGCTGGTGAAGATTGCTATTGGCTCGTTTGCAGCAGCTTTCTCTGGCATCTCAAAGCCATTTTTTGGGTTCTACATCATCACCATTGGAGTAGCATACTTTCATGAAGATGCAAAGCGGAAAGTTGGATATTTTTCAGCCATTTTCTCTGCAATAGGGTTGCTTTCATTATTTAGCCACACCTTCCAGCATTACTTCTTTGGAATGGTTGGAGAAAAGGCCATGGCAAATCTCAGATGTGCTCTGTATTCAGGTGTGCTTCGGAATGAAGTAGGCTGGTTTGACAAATCTGAGAACACTGTTGGCTCATTAACTTCACGCATTATCAGTGATACTTCCATGGTCAAAATCATAATTGCTGATCGCATGTCCGTGATTGTGCAATGTGTTTCCTCCATACTGATAGCAACAGTTGTCAGCATGATTGTCAACTGGAGAATGAGTTTGGTAGCTTGGGCTGTGATGCCCTGCCACTTTATAGGTGGTCTCATTCAAGCCAAGTCTGCCAAAGGGTTTTCAGGTGACTACTCCACTGCACATTCTGAGCTTGTTGCTCTTGCATCGGAGTCTGCAACCAACATAAGGACTATTGCGTCATTTTGTCATGAAGAGGAAGTACTGAAGAAAGTCAAAACATCTCTGGAATTTCCAATGAAAAAGTACAGGAATGAAAGTATCAAATATGGTATCATTCAAGGTTTCTCCCTTTGCTTGTGGAACATTGCACATGCTGTTGCTTTGTGGTACACAACAATTCTGGTTGACAGACGTCAAGCCTCCTTTGAAAATGGAATAAGATCATACCAAATTTTTTCTCTCACAGTGCCTTCTATCACGGAATTATACACGCTGATCCCAACTGTCATCTCTGCTATCAATATACTCACCCCAGCATTCAAAACCCTTGACCGTAAAACTGAAATTGAACCAGATAAACCAGATGATTCCCAGCCTGAGAGGATCCAAGGAAATGTTGAATTTGATCATGTAATATTCAACTACCCTTCAAGACCTGCAGTCACTGTTCTTGACAATTTCAGTTTACAAATTGAAGCTGGATCGAAAGTGGCTTTTGTAGGACCAAGCGGCGCTGGAAAATCCTCTGTTTTGGCCCTTATACTAAGATTTTACGATCCAGGTGCAGGAAAGGTATTAATTGACGGGAAAGACATACGGGAATATAATCTAAGATGGTTAAGGACACAAATAGGGCTGGTACAGCAAGAGCCACTGCTTTTTAACTGCTCGATTAGCGACAATATTTGCTATGGCAATAATGGGGCTTCTGAAAGTGAAATAGTGGAGGTTGCCAGGGAAGCAAACATACATGAATTTGTGAGTAATCTGCCAAATGGATATAACACTGTTGTAGGAGAGAAAGGCTGCCAGCTTTCAGGAGGGCAGAAGCAAAGAATAGCCATTGCCAGAACATTACTAAAGAAGCCTGCAATACTGCTCCTTGACGAAGCAACAAGTGCTCTTGATGCTGAGTCTGAAAGAATTATAGTAAATGCTTTAAAAGCAATGAACCTGAAAGAAGACAGTGGCTTGTGTTCAAGAACCACCCAGATCTCAGTAGCTCATAGACTTTCCACAGTAATAAACTCAGATACCATAATTGTCATGGATAAAGGTAAAATTGTAGAGATGGGCTCCCACTCAACCTTAATAGCAGAAGATGCGGGGCTTTATTCTAAGTTATTCAGGTTACAGAGCTTTGAAGAAGCTTCATAG 3741 0.4173 MAEEEDGHDDEPKKNVVRTLPFFKLLSYADLVDWILMGLGVVGSIVHGMALPVGYLLLGKALNAFGDNINDQDAMVDALKQVVPFVWYMAIATFPAGVLEIGCWMYTSERQLSRLRLAYLRAVLSQEIGAFDTELTGGKVITGISKHMSVIQDAIGEKLGHFTSSCATFFAGIVIATICCWEVALLCLVVVPLILIIGATYTKKMNTISTTKLIYHSEATSMIEQTIAHIKTVYAFVGESTAIKSFTENMDKQYIISKGEALVKGVGTGMFQTVSFCSWALIIWVGAVVVRAGRAKGGDIIAAVMSILFGAISLTYAAPDMQIFNQAKAAGYEVFQMIQRKPLIKNEPKGKMPRKIKGDIELRDVYFSYPSRPEKPILQGLSLSIPAGKTVALVGTSGCGKSTVISLVTRFYDPLRGEIFIDGHKIKDLDLKFLRRNIGVVSQEPSLFAGTIKDNLKLGKMDANDEEIQKATVMSNAHTFISQLPNQYLTEVGQRGVQLSGGQKQRIAIARAILKNPPILLLDEATSALDTESEKLVQEALETAMQGRTVILIAHRLSTVVNADMIAVVENGQVVETGTHQSLLNTSKFYSTLFSMQNLEKPVPESRTTISKNKSARQEDIIPDEIRPPQETQKEVQRTLPEHSVLKEQNKTSTRERSIFFRIWFDLKKELVKIAIGSFAAAFSGISKPFFGFYIITIGVAYFHEDAKRKVGYFSAIFSAIGLLSLFSHTFQHYFFGMVGEKAMANLRCALYSGVLRNEVGWFDKSENTVGSLTSRIISDTSMVKIIIADRMSVIVQCVSSILIATVVSMIVNWRMSLVAWAVMPCHFIGGLIQAKSAKGFSGDYSTAHSELVALASESATNIRTIASFCHEEEVLKKVKTSLEFPMKKYRNESIKYGIIQGFSLCLWNIAHAVALWYTTILVDRRQASFENGIRSYQIFSLTVPSITELYTLIPTVISAINILTPAFKTLDRKTEIEPDKPDDSQPERIQGNVEFDHVIFNYPSRPAVTVLDNFSLQIEAGSKVAFVGPSGAGKSSVLALILRFYDPGAGKVLIDGKDIREYNLRWLRTQIGLVQQEPLLFNCSISDNICYGNNGASESEIVEVAREANIHEFVSNLPNGYNTVVGEKGCQLSGGQKQRIAIARTLLKKPAILLLDEATSALDAESERIIVNALKAMNLKEDSGLCSRTTQISVAHRLSTVINSDTIIVMDKGKIVEMGSHSTLIAEDAGLYSKLFRLQSFEEAS 1246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi315g00018 1246 ProSitePatterns ABC transporters family signature. 1133 1147 IPR017871 GO:0005524|GO:0016887
Sebi315g00018 1246 CDD ABC_6TM_Pgp_ABCB1_D2_like 668 977 - -
Sebi315g00018 1246 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 994 1238 IPR003439 GO:0005524
Sebi315g00018 1246 SUPERFAMILY ABC transporter transmembrane region 660 980 IPR036640 GO:0005524|GO:0016020
Sebi315g00018 1246 MobiDBLite consensus disorder prediction 612 649 - -
Sebi315g00018 1246 SUPERFAMILY ABC transporter transmembrane region 24 347 IPR036640 GO:0005524|GO:0016020
Sebi315g00018 1246 Gene3D - 984 1245 IPR027417 -
Sebi315g00018 1246 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 360 596 IPR003439 GO:0005524
Sebi315g00018 1246 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 986 1240 IPR027417 -
Sebi315g00018 1246 Pfam ABC transporter 378 527 IPR003439 GO:0005524
Sebi315g00018 1246 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 675 959 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi315g00018 1246 Pfam ABC transporter transmembrane region 38 311 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi315g00018 1246 Pfam ABC transporter transmembrane region 676 938 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi315g00018 1246 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 39 326 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi315g00018 1246 CDD ABC_MTABC3_MDL1_MDL2 360 597 - -
Sebi315g00018 1246 SMART AAA_5 1021 1215 IPR003593 GO:0016887
Sebi315g00018 1246 SMART AAA_5 387 579 IPR003593 GO:0016887
Sebi315g00018 1246 FunFam ABC transporter B family member 1 984 1241 - -
Sebi315g00018 1246 Pfam ABC transporter 1012 1161 IPR003439 GO:0005524
Sebi315g00018 1246 ProSitePatterns ABC transporters family signature. 499 513 IPR017871 GO:0005524|GO:0016887
Sebi315g00018 1246 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 351 597 IPR027417 -
Sebi315g00018 1246 Gene3D ABC transporter type 1, transmembrane domain 636 982 IPR036640 GO:0005524|GO:0016020
Sebi315g00018 1246 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 334 - -
Sebi315g00018 1246 Gene3D - 350 598 IPR027417 -
Sebi315g00018 1246 Gene3D ABC transporter type 1, transmembrane domain 24 612 IPR036640 GO:0005524|GO:0016020
Sebi315g00018 1246 MobiDBLite consensus disorder prediction 604 649 - -
Sebi315g00018 1246 PANTHER ABC TRANSPORTER B FAMILY 3 727 IPR039421 -
Sebi315g00018 1246 FunFam ABC transporter B family member 4 350 605 - -
Sebi315g00018 1246 CDD ABC_MTABC3_MDL1_MDL2 994 1240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi315g00018 Sebi-Chr315 276351 284236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi315g00018 10 1242 Calmodulin-binding Proteins AT2G36910 41.237 0.0 964