Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi315g00009 ATGGAAGCCCTGTTGTGCAGAAAATTGGGTGATCCAACGGTGGGTTTGGAAGAGAATTCCAGCCCAATATTTGTGTCCAAGAACCACCCCATCCCTCAACTCGATTCTCCCACTGCGGTGAGAGTGAGGATCAAAGCCACAAGCTTGAATTTCGCAAATTACTTGCAGATTTTGGGCAAATACCAGGAGAAACCCCCTTTGCCATTCATCCCTGGTTCCGATTTTTCAGGCTTCGTTGACGCTGTTGGCCCCAAAGTTTCCAACTTTCGAGTCGGAGACCCTGTTTGTTCCTTCATCGCCCTTGGCTCGTTTGCTCAGTACATCGTTATTGATGAGACCCAATTGTTTCACGTGCCAGAAGGTTGTGATCTGGTTGCTGCTGGAGCACTTGCTGTGGCATTTGGCACTTCTCATGTAGCACTAGTTCATAGAGCTCAATTGACCTCTGGTCAGGTATTGTTGGTTTTGGGTGCAGCAGGAGGTGTGGGCCTTGCAGCTGTGCAAATTGGAAAAGCATGTGGTGCCATTGTCATTGCTGTTGCTAGGGGAGCTGAAAAGGTGCAGCTCTTGAAATCCATTGGTGTTGATCATGTGGTGGACTTGAGTAATGAAAATGTTACTCAGAGTGTCAAAGAGTTCCTTAAGGCTAGAAGGCTAAAAGGGGTTGATGTCCTGTATGACCCAGTTGGAGGCAAGCTTACTAAAGAATCTCTGCGGCTTCTGAAATGGGGAGCTAACATTTTGATAATTGGATTTGCAAGTGGAGAAATTCCTGTCATCCCTGCTAACATAGCTCTTGTCAAGAATTGGACAGTGCATGGCCTTTATTGGGGTAGCTATAAAATACACCGCCCAAGTGTTCTTGAAGATTCTCTCAAGCAGCTACTGTCTTGGTTGGCAAGAGGCTTGATTTCTATCCACATTTCTCATTCTTACCGCTTGTCAGAGGCCAACCTCGCCTTTTCTGCCATCAAAGATAGGAAAGCTATTGGGAAGTTCTTCAAATGCCAAAAACTTATTAGTAATGTGATGTATGAAGAATTGAAAACAATCATTTCAAGAAAAAAGGTTGTTGACGAGTTTCCTTTCTGCGTCCATCTGGTTAGTTGGGAGAAGGAAAATGTTTCAAGTGAGGCATTGGAAGCTGCTAGGATTGCATGCAACAAATATATGGCTAAATTTGCTGGAAAGGATGCTTTCCACTTGAGAGTAAGAGTACATCCGTTCCATGTTCTTAGGATCAACAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAGACTGGGATGAGAGGTGCGTTTGGAAAGCCACAGGGCACATGTGCTAGAGTGGCCATTGGTCAGGTCCTTCTTTCTGTCCGCTGTAAGGACAGCAACAGCCATCATGCACAGGAAGCCCTACGTCGTGCTAAGTTTAAGTTCCCTGGTCGTCAAAAGATCATAGTTAGTAGGAAATGGGGTTTCACCAAGTTTAGTCGTACTGATTATCTCAAGTTCAAGTCAGAGAACAGAATTGTCCCTGATGGTGTGAATGCAAGCTTCTTGGGTGTCATGGACCATTGGCAAATCGTCAACCTGGAAGAGCTTTTCTCTCAAGTGCTACTGCGTAGGTGTTCTGTTACATGGAATAGTAGTAGACTTTGA 1644 0.4513 MEALLCRKLGDPTVGLEENSSPIFVSKNHPIPQLDSPTAVRVRIKATSLNFANYLQILGKYQEKPPLPFIPGSDFSGFVDAVGPKVSNFRVGDPVCSFIALGSFAQYIVIDETQLFHVPEGCDLVAAGALAVAFGTSHVALVHRAQLTSGQVLLVLGAAGGVGLAAVQIGKACGAIVIAVARGAEKVQLLKSIGVDHVVDLSNENVTQSVKEFLKARRLKGVDVLYDPVGGKLTKESLRLLKWGANILIIGFASGEIPVIPANIALVKNWTVHGLYWGSYKIHRPSVLEDSLKQLLSWLARGLISIHISHSYRLSEANLAFSAIKDRKAIGKFFKCQKLISNVMYEELKTIISRKKVVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYLKFKSENRIVPDGVNASFLGVMDHWQIVNLEELFSQVLLRRCSVTWNSSRL 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi315g00009 547 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1 334 - -
Sebi315g00009 547 Pfam Alcohol dehydrogenase GroES-like domain 38 97 IPR013154 -
Sebi315g00009 547 Pfam Zinc-binding dehydrogenase 161 300 IPR013149 -
Sebi315g00009 547 Gene3D - 494 519 - -
Sebi315g00009 547 CDD QOR1 1 332 - -
Sebi315g00009 547 Pfam Ribosomal protein L16p/L10e 355 481 IPR016180 GO:0003735|GO:0005840|GO:0006412
Sebi315g00009 547 ProSitePatterns Ribosomal protein L10e signature. 423 444 IPR018255 GO:0003735|GO:0005840|GO:0006412
Sebi315g00009 547 FunFam 60S ribosomal protein L10 325 517 - -
Sebi315g00009 547 SUPERFAMILY Ribosomal protein L16p/L10e 355 488 IPR036920 GO:0003735|GO:0005840|GO:0006412
Sebi315g00009 547 Gene3D - 133 280 - -
Sebi315g00009 547 Gene3D - 35 331 - -
Sebi315g00009 547 Gene3D Ribosomal protein L10e/L16 352 493 IPR036920 GO:0003735|GO:0005840|GO:0006412
Sebi315g00009 547 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 122 287 IPR036291 -
Sebi315g00009 547 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 150 171 IPR002364 GO:0008270|GO:0016491
Sebi315g00009 547 SUPERFAMILY GroES-like 26 151 IPR011032 -
Sebi315g00009 547 CDD Ribosomal_L16_L10e 356 481 IPR016180 GO:0003735|GO:0005840|GO:0006412
Sebi315g00009 547 SMART PKS_ER_names_mod 17 335 IPR020843 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi315g00009 Sebi-Chr315 112874 122873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi315g00009 354 515 Cytoplasmic Ribosomal Protein Gene Family AT1G26910 87.654 9.89e-102 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi315g00009 K00344 - gmx:100817700 580.482