LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi314g00085	ATGTCGGTGAATCTAACGCCGAATGCGATCCCGGCGATAGTAGCCGGCGACATGAACTCAAAACCATTGGTGCAGGTTTTGGATATCAAGTTGATTTCGAATAACAAACAGGAGAGGTACCGCATTTTGCTCTCAGATGCTGTTTCCTCTCAGCACGCCATGCTCGCCACTCAACTCAACGATCGAATCCGAACCGGACGAGTTAAGAAAGGTTCCGTCGTTCAGCTGATCGAGTACATTTGCAGTCCTATTCAGAACCGCAAGATTATTGTGGTTCTCAACATGGAAACTATAATACCAGATTGTGAGATCATTGGAAATCCAAAGTCATTTGTGGAATCTGATTTACCAACTCAGGAAGTTTTACCTAATAACAACATGCAGAATTCATCTGGGAGTAATAATTATCATCAGCCAGCTCAAAATGCAAGTTGTAATGTGCAGAATTTAAGGCCAACTGTTCAACCTCCATACCAGCCGCCACCTGTTTACAAAAGCCATGGTGCAATAGTGAAAAATGAAGCCTCGACACGTATTATTCCAATAGCTGCTTTAAATCCTTATCAAGGTCGGTGGGCCATCAAGGCAAGGGTGACTGCAAAAGGGGATCTACGCCGCTATAATAATGCCAGGGGAGATGGGAAGGTCTTCTCATTTGATCTCCTTGATTCTGATGGAGGTGAAATACGAGTAACCTGCTTTAATACAGTTGTTGATCGCTTCTATGATGCAATCGAGGTTGGTAGAGTTTACATGTTATCCAAAGGTAGCTTGAAACCTGCGCAGAAGAACTTCAACCATTTAAAGAATGAATGGGAAATTCTTTTGGATTTGACATCAACTGTTGAACTTTGCCCGGAGGAAGATGTTCCCATCTTGAGGAAGAATGGAATGGAAACTCAGAGAAGAATTTTGAACCTAAAGGACTGTTCTGGTAGGAGTGTTGAACTAACCCTTTGGGGTGAATTTTGCGACAGGGAAGGGCAAAAGTTGCAAGAGATGGTCGATGCTAGGTTTTTCCCCATTCTGGCAGTCAAAGCTGGGAAGGTCAATGACTTTAGTGGGAAATCTATAGGGACTATTTCTGCTACACAGCTTTTCATAAATCCAGATTTCTCTGAGGCATGTAGCTTAAGGGACTGGTTTGATAGAGTGGGAAAAGATTCTGCTTCTCTGTCCATTACTAAGGACATTATACCTGGAGGACCTAAGAATGACGTACGTAAAACTGTTTCTCAGATCAAGGATGAAGGTCTGGGGCGGTCAGATAAGCCAGATTGGATAACGGTGAGGGCAACGATATCTTTCATCAAGACAGATACATTTTGTTACACAGCTTGTCCTCTGATGGTTGGAGATCGACAGTCTCAAATTCTGGATCATACGGGAATAACTTGGGTAACTGCTTTCCAGGAATCAGGGGAAGAGATTTTGGGTTACTCAGCAAAGGAGTTGTACCTGTTGAAGTATGAACAGCAAGATGATGAGAAGTTTGCAGGAATAATCAAGAGTTCTCTTCAACCAATTTGTCTTCAGGCTAAAAATTAA	1548	0.427	MSVNLTPNAIPAIVAGDMNSKPLVQVLDIKLISNNKQERYRILLSDAVSSQHAMLATQLNDRIRTGRVKKGSVVQLIEYICSPIQNRKIIVVLNMETIIPDCEIIGNPKSFVESDLPTQEVLPNNNMQNSSGSNNYHQPAQNASCNVQNLRPTVQPPYQPPPVYKSHGAIVKNEASTRIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNTVVDRFYDAIEVGRVYMLSKGSLKPAQKNFNHLKNEWEILLDLTSTVELCPEEDVPILRKNGMETQRRILNLKDCSGRSVELTLWGEFCDREGQKLQEMVDARFFPILAVKAGKVNDFSGKSIGTISATQLFINPDFSEACSLRDWFDRVGKDSASLSITKDIIPGGPKNDVRKTVSQIKDEGLGRSDKPDWITVRATISFIKTDTFCYTACPLMVGDRQSQILDHTGITWVTAFQESGEEILGYSAKELYLLKYEQQDDEKFAGIIKSSLQPICLQAKN	515

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi314g00085	515	Pfam	OB-fold nucleic acid binding domain	193	271	IPR004365	GO:0003676
	Sebi314g00085	515	SUPERFAMILY	Nucleic acid-binding proteins	293	386	IPR012340	-
	Sebi314g00085	515	CDD	RPA1N	9	99	IPR007199	GO:0003677\|GO:0005634\|GO:0006260
	Sebi314g00085	515	FunFam	Replication protein A subunit	178	288	-	-
	Sebi314g00085	515	SUPERFAMILY	Nucleic acid-binding proteins	1	107	IPR012340	-
	Sebi314g00085	515	Gene3D	-	178	287	IPR012340	-
	Sebi314g00085	515	CDD	RPA1_DBD_B	294	383	-	-
	Sebi314g00085	515	FunFam	Replication protein A subunit	4	112	-	-
	Sebi314g00085	515	PANTHER	REPLICATION FACTOR A 1, RFA1	192	505	IPR004591	GO:0003677\|GO:0005634\|GO:0006260\|GO:0006281\|GO:0006310
	Sebi314g00085	515	CDD	RPA1_DBD_A	181	284	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi314g00085	Sebi-Chr314	1046761	1049435	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi314g00085	26	506	Core DNA Replication Machinery Family	AT2G06510	59.051	0.0	659

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi314g00085	K07466		-	zju:107409151	774.622

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