Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi314g00085 ATGTCGGTGAATCTAACGCCGAATGCGATCCCGGCGATAGTAGCCGGCGACATGAACTCAAAACCATTGGTGCAGGTTTTGGATATCAAGTTGATTTCGAATAACAAACAGGAGAGGTACCGCATTTTGCTCTCAGATGCTGTTTCCTCTCAGCACGCCATGCTCGCCACTCAACTCAACGATCGAATCCGAACCGGACGAGTTAAGAAAGGTTCCGTCGTTCAGCTGATCGAGTACATTTGCAGTCCTATTCAGAACCGCAAGATTATTGTGGTTCTCAACATGGAAACTATAATACCAGATTGTGAGATCATTGGAAATCCAAAGTCATTTGTGGAATCTGATTTACCAACTCAGGAAGTTTTACCTAATAACAACATGCAGAATTCATCTGGGAGTAATAATTATCATCAGCCAGCTCAAAATGCAAGTTGTAATGTGCAGAATTTAAGGCCAACTGTTCAACCTCCATACCAGCCGCCACCTGTTTACAAAAGCCATGGTGCAATAGTGAAAAATGAAGCCTCGACACGTATTATTCCAATAGCTGCTTTAAATCCTTATCAAGGTCGGTGGGCCATCAAGGCAAGGGTGACTGCAAAAGGGGATCTACGCCGCTATAATAATGCCAGGGGAGATGGGAAGGTCTTCTCATTTGATCTCCTTGATTCTGATGGAGGTGAAATACGAGTAACCTGCTTTAATACAGTTGTTGATCGCTTCTATGATGCAATCGAGGTTGGTAGAGTTTACATGTTATCCAAAGGTAGCTTGAAACCTGCGCAGAAGAACTTCAACCATTTAAAGAATGAATGGGAAATTCTTTTGGATTTGACATCAACTGTTGAACTTTGCCCGGAGGAAGATGTTCCCATCTTGAGGAAGAATGGAATGGAAACTCAGAGAAGAATTTTGAACCTAAAGGACTGTTCTGGTAGGAGTGTTGAACTAACCCTTTGGGGTGAATTTTGCGACAGGGAAGGGCAAAAGTTGCAAGAGATGGTCGATGCTAGGTTTTTCCCCATTCTGGCAGTCAAAGCTGGGAAGGTCAATGACTTTAGTGGGAAATCTATAGGGACTATTTCTGCTACACAGCTTTTCATAAATCCAGATTTCTCTGAGGCATGTAGCTTAAGGGACTGGTTTGATAGAGTGGGAAAAGATTCTGCTTCTCTGTCCATTACTAAGGACATTATACCTGGAGGACCTAAGAATGACGTACGTAAAACTGTTTCTCAGATCAAGGATGAAGGTCTGGGGCGGTCAGATAAGCCAGATTGGATAACGGTGAGGGCAACGATATCTTTCATCAAGACAGATACATTTTGTTACACAGCTTGTCCTCTGATGGTTGGAGATCGACAGTCTCAAATTCTGGATCATACGGGAATAACTTGGGTAACTGCTTTCCAGGAATCAGGGGAAGAGATTTTGGGTTACTCAGCAAAGGAGTTGTACCTGTTGAAGTATGAACAGCAAGATGATGAGAAGTTTGCAGGAATAATCAAGAGTTCTCTTCAACCAATTTGTCTTCAGGCTAAAAATTAA 1548 0.427 MSVNLTPNAIPAIVAGDMNSKPLVQVLDIKLISNNKQERYRILLSDAVSSQHAMLATQLNDRIRTGRVKKGSVVQLIEYICSPIQNRKIIVVLNMETIIPDCEIIGNPKSFVESDLPTQEVLPNNNMQNSSGSNNYHQPAQNASCNVQNLRPTVQPPYQPPPVYKSHGAIVKNEASTRIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNTVVDRFYDAIEVGRVYMLSKGSLKPAQKNFNHLKNEWEILLDLTSTVELCPEEDVPILRKNGMETQRRILNLKDCSGRSVELTLWGEFCDREGQKLQEMVDARFFPILAVKAGKVNDFSGKSIGTISATQLFINPDFSEACSLRDWFDRVGKDSASLSITKDIIPGGPKNDVRKTVSQIKDEGLGRSDKPDWITVRATISFIKTDTFCYTACPLMVGDRQSQILDHTGITWVTAFQESGEEILGYSAKELYLLKYEQQDDEKFAGIIKSSLQPICLQAKN 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi314g00085 515 Pfam OB-fold nucleic acid binding domain 193 271 IPR004365 GO:0003676
Sebi314g00085 515 SUPERFAMILY Nucleic acid-binding proteins 293 386 IPR012340 -
Sebi314g00085 515 CDD RPA1N 9 99 IPR007199 GO:0003677|GO:0005634|GO:0006260
Sebi314g00085 515 FunFam Replication protein A subunit 178 288 - -
Sebi314g00085 515 SUPERFAMILY Nucleic acid-binding proteins 1 107 IPR012340 -
Sebi314g00085 515 Gene3D - 178 287 IPR012340 -
Sebi314g00085 515 CDD RPA1_DBD_B 294 383 - -
Sebi314g00085 515 FunFam Replication protein A subunit 4 112 - -
Sebi314g00085 515 PANTHER REPLICATION FACTOR A 1, RFA1 192 505 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi314g00085 515 CDD RPA1_DBD_A 181 284 - -
Sebi314g00085 515 Pfam Replication factor-A protein 1, N-terminal domain 5 98 IPR007199 GO:0003677|GO:0005634|GO:0006260
Sebi314g00085 515 Gene3D - 3 112 IPR012340 -
Sebi314g00085 515 SUPERFAMILY Nucleic acid-binding proteins 179 288 IPR012340 -
Sebi314g00085 515 Pfam Replication protein A OB domain 289 369 IPR031657 -
Sebi314g00085 515 CDD RPA1_DBD_C 411 503 IPR047192 -
Sebi314g00085 515 SUPERFAMILY Nucleic acid-binding proteins 408 504 IPR012340 -
Sebi314g00085 515 Gene3D - 288 393 IPR012340 -
Sebi314g00085 515 Gene3D - 402 507 IPR012340 -
Sebi314g00085 515 Pfam Replication factor-A C terminal domain 456 504 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi314g00085 Sebi-Chr314 1046761 1049435 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi314g00085 26 506 Core DNA Replication Machinery Family AT2G06510 59.051 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi314g00085 K07466 - zju:107409151 774.622