Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi314g00080 ATGGCTCATGCTCCTTATCCTTATGTTGATCCTTCTTTTGGTGGTTCATTAGTTGCTTATGGACCACATGCTATTAATCAACCCCAAATGTTACCCCAGATGTTGGGATTAGCTTCCACCAGAATTGCATTACCACTTGATCTTGCAGAAGATGGGCCCATTTATGTCAATGCAAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAGCTTGAGGCTCAAAACAAACTCATCAAAAGTCGAAAGCCATATCTTCATGAGTCTCGTCACCGCCATGCATTGAAGAGGGTTAGGGGATGTCTTAGCGCCAAACAGATGCAGCAATCTAATGCTGAACTAATCCATCCAGGCTCAGACCCTGTCAATGTTTATCAAAGGAAAGATGCATCAGAGGTGGAAAGTCATCCCTCAAGAACTGGAGAAAATGCATCTTCTTCTATCACAACTTGCTCTGGCCAAACAAGTCTGTCCAGTAACAGTGTTAATTTTAGGCAGCATGAGCACAAGTTCTTGGGAAACTCTCCAAACATTGGTGGAGCATCACAATGCAGTGGAGGACTCACCTTTGGTGGGGGAATTCAGCAATATGCTCCATTTGGCCGGTAA 615 0.4423 MAHAPYPYVDPSFGGSLVAYGPHAINQPQMLPQMLGLASTRIALPLDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALKRVRGCLSAKQMQQSNAELIHPGSDPVNVYQRKDASEVESHPSRTGENASSSITTCSGQTSLSSNSVNFRQHEHKFLGNSPNIGGASQCSGGLTFGGGIQQYAPFGR 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi314g00080 204 MobiDBLite consensus disorder prediction 139 161 - -
Sebi314g00080 204 ProSitePatterns NF-YA/HAP2 subunit signature. 55 75 IPR018362 GO:0003677|GO:0016602
Sebi314g00080 204 ProSiteProfiles NF-YA/HAP2 family profile. 50 110 IPR001289 GO:0003700|GO:0006355
Sebi314g00080 204 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 6 169 IPR001289 GO:0003700|GO:0006355
Sebi314g00080 204 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 53 103 IPR001289 GO:0003700|GO:0006355
Sebi314g00080 204 Gene3D - 51 105 - -
Sebi314g00080 204 PRINTS CCAAT-binding transcription factor subunit B signature 53 75 IPR001289 GO:0003700|GO:0006355
Sebi314g00080 204 PRINTS CCAAT-binding transcription factor subunit B signature 84 107 IPR001289 GO:0003700|GO:0006355
Sebi314g00080 204 SMART cbf3 49 107 IPR001289 GO:0003700|GO:0006355
Sebi314g00080 204 MobiDBLite consensus disorder prediction 129 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi314g00080 Sebi-Chr314 981857 983598 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi314g00080 2 112 CCAAT-HAP2 Transcription Factor Family AT1G17590 57.265 3.29e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Sebi314g00080 CBFB_NFYA 8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi314g00080 K08064 - gmx:100792905 307.375