Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi314g00063 ATGTCCGGTGACGCCACGAACTGGGATGAAGATGCGTACAGGGAAAGCATACTGAAGGAGCGGGAGATTCAAACGCAAACCGTTTTCCGAACCGCCTGGGCTCCCTCTCAAAGCCCTAACCTCGACTCTCTCATCGTTGCCTCCAGCGACGGTTCCATCGCCTCCTACTCCATCTCTTCCGCCATCTCTGCCTATAAGCTCAATAATCCCTTTGGTTTTACCAATACCAACTCAGATAAGTTATTGGCTGAACCAAGTTGCTTCATTCAAGCACATGATGGACCTGCATATGATGTCAAATTCTATGGTGATGGTGAAGATGCTCTGTTGCTGAGTTGTGGTGATGATGGTCGGATTCGAGGATGGAAGTGGAAGGAACTTACAACCTCAAAGTATTCTGTTTCTTCGCAAGGAAATGATATCAAGCCTATACTTGATGTGGTAAATCCTCAACACAATTCTCTGATTGTCCTCTATATACCCACACCGTTGTCTTTCAGAGGTCCTTGGGGTGCTCTTTCACCTGTCCCTGAGAATAATGCTATTGCTGTTAATACTCAGGGGGGATCTGTTTTTGCTGCTTCTGGTGATTCCTGTGCATATTGTTGGGATGTGGAAACTGGGAAAGTAAAAATGGTGTTCAAGGGGCACTCGGACTACTTGCATTGTATAGTTGCTCGCAACTCATCAGATCAGATCATAACAGGTTCAGAGGATGGGACCGCACGAATTTGGGATTGCAAAAGTGGAAAGTGTATCCAAACGATTAATCCAGCAAAACATTTGAAGTTAAAAGGATCTGTTTCATGGGTTGGCTGCATTGCTTTAGATGCAAGTGAGAGCTGGTTGGCTTGCAGTAATGGACGGAATATATCGCTTTGGAACCTTCCTGCTTCAGAGTGCATATCAAAGATTTCAACTTGTGGTTCTGTACAGGACATGTTATTTGACAATAATCAAATTTTGACTGTTGGTGCCGACCCTCTACTCAATCGCTTTGACATGAATGGAGCGATCCTTTCACAAATACAGTGTGCTCCTCCATCAGCTTTTTCTATCTCCTTACATCCAGCAGGGGTTATGGCGGTTGGAGGTTATGGATGTCTTGTGGATGTTATCTCACAATTTGGCAGTCACATGTGCACATTTCATTGCCAATGTGTTCAGCGAAGTTCATAG 1179 0.4478 MSGDATNWDEDAYRESILKEREIQTQTVFRTAWAPSQSPNLDSLIVASSDGSIASYSISSAISAYKLNNPFGFTNTNSDKLLAEPSCFIQAHDGPAYDVKFYGDGEDALLLSCGDDGRIRGWKWKELTTSKYSVSSQGNDIKPILDVVNPQHNSLIVLYIPTPLSFRGPWGALSPVPENNAIAVNTQGGSVFAASGDSCAYCWDVETGKVKMVFKGHSDYLHCIVARNSSDQIITGSEDGTARIWDCKSGKCIQTINPAKHLKLKGSVSWVGCIALDASESWLACSNGRNISLWNLPASECISKISTCGSVQDMLFDNNQILTVGADPLLNRFDMNGAILSQIQCAPPSAFSISLHPAGVMAVGGYGCLVDVISQFGSHMCTFHCQCVQRSS 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi314g00063 392 SMART WD40_4 298 334 IPR001680 GO:0005515
Sebi314g00063 392 SMART WD40_4 14 57 IPR001680 GO:0005515
Sebi314g00063 392 SMART WD40_4 249 295 IPR001680 GO:0005515
Sebi314g00063 392 SMART WD40_4 207 246 IPR001680 GO:0005515
Sebi314g00063 392 SMART WD40_4 82 123 IPR001680 GO:0005515
Sebi314g00063 392 SMART WD40_4 166 204 IPR001680 GO:0005515
Sebi314g00063 392 Gene3D - 166 391 IPR015943 GO:0005515
Sebi314g00063 392 Gene3D - 8 140 IPR015943 GO:0005515
Sebi314g00063 392 PANTHER THO COMPLEX SUBUNIT 6 HOMOLOG 1 387 IPR042626 -
Sebi314g00063 392 ProSiteProfiles Trp-Asp (WD) repeats profile. 214 255 IPR001680 GO:0005515
Sebi314g00063 392 Pfam WD domain, G-beta repeat 264 295 IPR001680 GO:0005515
Sebi314g00063 392 Pfam WD domain, G-beta repeat 210 246 IPR001680 GO:0005515
Sebi314g00063 392 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 214 246 - -
Sebi314g00063 392 SUPERFAMILY WD40 repeat-like 33 375 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi314g00063 Sebi-Chr314 799702 805872 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi314g00063 182 257 Eukaryotic Initiation Factors Gene Family AT2G46280 31.579 2.84e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi314g00063 - - gmx:100806423 664.84