Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi314g00055 ATGAAGCAGACAATAACATTTTTGGTTGCTCGATCTCATTGGCAGAGTGCTATTTTCATGGGGTGCAACAAAGGGGAAATTGAGCTTGGCTTCTCCAATATTATATCTCAAGGTGGTGACATTCAGTTTCCAGAAGTTCTCTCTTTACAGTCCCAATATTCAATTGATGATGATCAGATTAATATTATTGGACCTTCATCATCTAATTCATCTTCTTTCAAATCATTATCTACAGCAGGAGCTCAAGTCAATATTCCAAGACCTGAGAGTGAACATGATGCAATTGTAAGAGCAATCCTCCATGTCATATCTCCCCAACAAAATATGCCTAATTCATTAATGTTACATTCAGAAGCTACTGCTTTCAAGAGATATGATAGAAGCACAAACATAACATCTACTTCCAAAATGGGATCCCAAAGGCAAAGCATGGTGAATAGGTCAATTGCACTCTTGAGAGGCTTAAATTCAATGAGAGAACGCATTCAAGCAACCACACGTCCCAATAGTATCCAACTTCTTCATACGATATCAGAGCGAAGAAGGCGTGAAAAACTCAATGACAATTTTCAGGCACTCAGAGCACTACTTCCTCCGGGAACTAAGAGAGACAAAGCGTCGATCCTTACAACAGCAAAGAAGACAATGAGCTCCTTAATAGCTGAAATTGAAGAGCTTCACTTGAAAAATCACAAGTTGATGGCACTTTTGTCAGCCAAAGAATTAGAAGAAAACAAAGGAAATGAAAGGATGAATATTGCTGGGGTTTCAAATGTAAATGTAAATGTAGTGGAGGCAGCGAGCTCATCATCAGAAGAGAGAATGGTGGAGTTACAAGTGAGTGTGAGAGGAGAAGTAAGTTCTCATTCTCAAGCTGATATTTTGATTCGCTTATTGGAATTCTTGAAAGGGGTTCAGAATATTGTGAGTTTGATTTCCATGGAGGCAAACACACATATTACACAAGGGACACTCATCAATCAATTAACCTTCAGGCTTAGGAGAATTGAGGTATGTATGTAA 1023 0.3861 MKQTITFLVARSHWQSAIFMGCNKGEIELGFSNIISQGGDIQFPEVLSLQSQYSIDDDQINIIGPSSSNSSSFKSLSTAGAQVNIPRPESEHDAIVRAILHVISPQQNMPNSLMLHSEATAFKRYDRSTNITSTSKMGSQRQSMVNRSIALLRGLNSMRERIQATTRPNSIQLLHTISERRRREKLNDNFQALRALLPPGTKRDKASILTTAKKTMSSLIAEIEELHLKNHKLMALLSAKELEENKGNERMNIAGVSNVNVNVVEAASSSSEERMVELQVSVRGEVSSHSQADILIRLLEFLKGVQNIVSLISMEANTHITQGTLINQLTFRLRRIEVCM 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi314g00055 340 SMART finulus 176 225 IPR011598 GO:0046983
Sebi314g00055 340 CDD bHLH_AtbHLH_like 175 226 IPR045239 -
Sebi314g00055 340 Gene3D - 172 245 IPR036638 GO:0046983
Sebi314g00055 340 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Sebi314g00055 340 Pfam Helix-loop-helix DNA-binding domain 175 219 IPR011598 GO:0046983
Sebi314g00055 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 170 219 IPR011598 GO:0046983
Sebi314g00055 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 235 IPR036638 GO:0046983
Sebi314g00055 340 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 55 334 IPR044658 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi314g00055 Sebi-Chr314 704135 705579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi314g00055 15 318 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 34.417 3.20e-39 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi314g00055 HLH 5.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi314g00055 - - gmx:100798452 241.891