Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi314g00034 ATGGAAGATGATGCAGAATGCATGACAGGGCTATGTCTGGGGCTGGGAATGGGAGGGCACCTTCCAAAAAAGGAGAAGCGGAAACTGAACAAGCCTCTGCCATGCCTTGACCTTGCCTTTGAGCTTTGTCCAAAAAGGGAAGTCCAGAAACAAGCACTTGCTGACCAATTGAATTTAAAGACAAGACAAATTGAAGTTTGGTTTCAGAACAGAAGAGCAAGAACAAAGTTGAAGCAAACAGAGGTGGATTATGAGTTGTTGAAAAAACAGTGTCAAAATCTAAGCGATGAGAACAAAAGGTTGAAGAAGGAATTGCAGGAACTGCGTGCACTGAAGCTTGGACCATCGCCTTTATGCATTCAGCTATCAAAAGCAGCCACTCTGAGTGTGTGTTCTTCGTGCGAGAAACTGTTAAAGATGAATGAAGGGAAGAACAACGTTGCCATCTCAGAAACAAAACTCAGAAATTAG 471 0.431 MEDDAECMTGLCLGLGMGGHLPKKEKRKLNKPLPCLDLAFELCPKREVQKQALADQLNLKTRQIEVWFQNRRARTKLKQTEVDYELLKKQCQNLSDENKRLKKELQELRALKLGPSPLCIQLSKAATLSVCSSCEKLLKMNEGKNNVAISETKLRN 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi314g00034 156 ProSitePatterns 'Homeobox' domain signature. 53 76 IPR017970 GO:0000981|GO:0006355
Sebi314g00034 156 CDD homeodomain 22 79 IPR001356 GO:0003677
Sebi314g00034 156 Pfam Homeobox associated leucine zipper 78 112 IPR003106 GO:0006355|GO:0043565
Sebi314g00034 156 ProSiteProfiles 'Homeobox' domain profile. 49 78 IPR001356 GO:0003677
Sebi314g00034 156 Pfam Homeodomain 48 76 IPR001356 GO:0003677
Sebi314g00034 156 SMART HOX_1 22 82 IPR001356 GO:0003677
Sebi314g00034 156 SMART halz 78 121 IPR003106 GO:0006355|GO:0043565
Sebi314g00034 156 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 48 142 - -
Sebi314g00034 156 Coils Coil 70 111 - -
Sebi314g00034 156 Gene3D - 22 84 - -
Sebi314g00034 156 SUPERFAMILY Homeodomain-like 48 87 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi314g00034 Sebi-Chr314 446215 447213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi314g00034 49 151 Homeobox Transcription Factor Family AT4G37790 62.136 1.76e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sebi314g00034 HALZ 4.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi314g00034 K09338 - lang:109339930 185.267