Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi314g00031 ATGGGAATCAGTAAAACAGAAGTAAACTTGAGGAGGTTGCTTGCAGCTTCTCCTCAGCAGCAAAACCAGGCAAAACTTGTACATTATGTTGCTACTTTGCGTGAACAATTGGAACAATTGGCTGAAGAGAGGACAACAGAAGGCTTACCAAGGATTTCAAAGGCTATGTTGAATGATTATTCAGAGAAGATTGAAACCATTGCTTCCAAGTTGGTGAACAATGTGCCTGACATACAAGAATCTGAGAAGGACAATGAGAGGGATTTTGTTAAAGAAAACCCTTCGGAAATTGAGGATAAAAAGCAGATACCACTTTCTTCTGGATTGCGAAGAAGGCCCGTACCTGCCTCAAGTACTGAAGATAGAACCCATGAGCTTGCTGAGACTGATCACTCATCACCTGTTAAACTGGATGCTGCAGCACACGCACACATCGAAAAGCACAGAAAGCTTCAAGACGATTTGACTGATGAGATGGTGGTGTTGGCAAAACAGCTCAAAGAGAGTAGTCTCATGATGAGCCAGTCTCTGCAAAATACTGAAAAGATACTTGATTCTACCGAGAAGGCCATTGAGCATAGCTTGGCCAGCACAGGTCGCGCCAATGTACGAGCAACGGCGATATACTCTGAGAGTTCCAAGACCTCTTGCTTAACGTGGCTTCTGATGTTTGTGATGACGGAGCATTCAGTTTCTTTTGGTGTCAGCAAGAGGAGATTAATACAGAGTGACAATTCTACTTCTCTTGGGCGTAGCAGCCACTCTGGAGGAACCAGCAGACTCTTCAGTAAGAACTACTCAACTCGCAATAATACAAGTACATCCTTTTGGGGCTCTGACATAGCCAAGCCTCTAGAAGGGGCAGCTTGGATAAACCACCTATTTGGAAGAGGTTCAAATGTTCGACCACTTTCATGGGACACAAGACTAAAGGTTAGGATTGGAGCAGCTAGGGGACTAAATTTCCTCCATTCCTTGGAGAAGAAAATTATATACAGAGATTTTAAGCCCTCAAATATACTACTTGACAAGTTTTGGTTTTGCACAGGCATATACAGTCAAGTTATCGGACTTTGCTTAGCCAAATTATTCAAAGGTGATCAGACTCACGTGTCAACACAGATTGTGGGAACATATGGCTATGCTGCTACCTGA 1155 0.4329 MGISKTEVNLRRLLAASPQQQNQAKLVHYVATLREQLEQLAEERTTEGLPRISKAMLNDYSEKIETIASKLVNNVPDIQESEKDNERDFVKENPSEIEDKKQIPLSSGLRRRPVPASSTEDRTHELAETDHSSPVKLDAAAHAHIEKHRKLQDDLTDEMVVLAKQLKESSLMMSQSLQNTEKILDSTEKAIEHSLASTGRANVRATAIYSESSKTSCLTWLLMFVMTEHSVSFGVSKRRLIQSDNSTSLGRSSHSGGTSRLFSKNYSTRNNTSTSFWGSDIAKPLEGAAWINHLFGRGSNVRPLSWDTRLKVRIGAARGLNFLHSLEKKIIYRDFKPSNILLDKFWFCTGIYSQVIGLCLAKLFKGDQTHVSTQIVGTYGYAAT 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi314g00031 384 CDD SNARE_USE1 148 204 - -
Sebi314g00031 384 PANTHER USE1-LIKE PROTEIN 1 227 IPR019150 -
Sebi314g00031 384 Pfam Membrane fusion protein Use1 5 227 IPR019150 -
Sebi314g00031 384 MobiDBLite consensus disorder prediction 115 135 - -
Sebi314g00031 384 Gene3D Transferase(Phosphotransferase) domain 1 291 384 - -
Sebi314g00031 384 SUPERFAMILY Protein kinase-like (PK-like) 294 383 IPR011009 -
Sebi314g00031 384 MobiDBLite consensus disorder prediction 77 106 - -
Sebi314g00031 384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 330 342 IPR008271 GO:0004672|GO:0006468
Sebi314g00031 384 MobiDBLite consensus disorder prediction 75 135 - -
Sebi314g00031 384 ProSiteProfiles Protein kinase domain profile. 131 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi314g00031 Sebi-Chr314 414674 422420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi314g00031 292 383 Glycoside Hydrolase AT3G07070 42.553 1.22e-15 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Sebi314g00031 Use1 2.3e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi314g00031 K08507 - gmx:100793814 375.555