Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi314g00023 ATGAATTTGTCCAATGGTCGTTCTTCTCCTTGCGGCCAGACGCAGCGTGATTTAGAGGCTGGGTCTCCCAGTAGCAGCTCCCCTGATTTTGATGGCGGAGAAGACAATTCCGATCCATTTGATATTACCAGAACAAAAAATGCTTCCATTCAAAGACTCAAGCGTTGGAGGTTCGCCATTGATTTAGAGGTTCAAAATTACAGTCTCAAGCAAGCTGCGCTTGTGCTTAACGCTTCTCGTCGATTTCGTTACACCTTGGATTTGAAGAAAGAAGAAGAGAGGAAGCAAATATTGAAATTGGTTACAGTGCATGCACGAGTTATTCAAGCAGCATATCGTTTCAAGGAAGCTGAGAAAGTGAATGGAACCATAGTACCACCTTCAAGCTCCAGTGGAGAATTTTCAATTGGACAAGAGAAGCTTTCTTCAATCTCAAGGGAGCATGATACTACTGCTCTGCGGGAATATGGAGGGGTTGTAGGGTTGTCACATTTGTTGAAAACCAATTTAGAGAAGGGGATTCAAGGTGATGATGCTGACTTGGTTAAACGAAGGAATACATTTGGTTCCAACAACTACCCTCGAAAGAAAGGAAGAAGTATTTTGATGTTTATCTGGGATGCTTGCAAGGATCTGACCTTGATTATTTTAATGGTAGCCGCCATAGCTTCATTAGCACTGGGGATAAAATCTGAGGGTATTAAGGAAGGATGGTATGATGGAGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTGTTGTTACAGGTGATGTTATACCCCTAAATATTGGTAACCAGGTCCCTGCTGATGGAATTTTAATCACTGGTCACTCTCTTGCAATTGATGAATCAAGTATGACTGGGGAGAGCAAGATTGTTGATAAGCATTCTAAGGAACCTTTTCTGATGTCTGGATGTAAAGTTGCAGGTGGAAGTGGTACTATGCTGGTAACTGCTGTCGGGATTAATACTGAATGGGGGCTTCTAATGGCTAGCATTTCAGAAGATACTGGTGAAGAAACACCTTTGCAGGTACGCTTAAATGGTGTTGCCACCTTCATTGGTATTGCTGGACTCTCTGTGGCTGCCATTGTTCTGATTGTGCTACTGGCCAGATATTTCTCTGGGCATACTAAAAACCCAGATGGAAGTGTTCAATTTATAGCGGGCAAGACCAGGGTTGGTGATGCTATTGATGGAGCAATTAAAATAGTCACTGTTGCGGTTACCATTGTAGTGGTTGCAGTGCCTGAAGGGCTCCCTTTAGCAGTTACCTTAACTCTTGATGGATATGCTGCAAGTCATAACATGGGTGCCATTGCACATTATGGTCTTGCCTATTCAATGAAAAAAATGATGGAAGATAAAGCTTTGGTGAGGAGGCTTTCTGCCTGTGAGACAATGGGGTCGGCCACAACCATTTGCAGTGATAAGACTGGAACATTGACTATGAATCAGATGACTGTGGTTGAGGCTTGCATTGGTGGGAAGAAGATTGTTCCACCTGACAAAAAGTCACAGCTCTCTCCAATGCTCTGCTCTTTGCTGATTGAAGGTGTTGCACAGAACACTAATGGAAGTGTTTATGTACGTGAGAGTGGTAATGGTGTTGAGGTTTCTGGATCACCAACAGAAAAGGCAATTTTACAGTGGGGAATTCAGCTTGGGATGGATTTTGAGGCTGCTAGATCAGAATCATCAATTATTCATGTCTTTCCATTTAATTCAGACAAAAAACGAGGCGGAGTTGCAATACAGACGACTGACTCTGAAATCCATATACATTGGAAAGGTGCTGCTGAGATAGTCCTTGCCTGCTGTACTGGGTATATTGATACAAATGATCAGTTGGTGGAAATGGATGAAGAGAAGATGACAGTTTTTAAAAAAGTTATTGAAGATATGGCTGCTGATAGTCTACGTTGTGTTGCCATTGCATATAGATTATATGAAATGGAGAATGTTCCAACTAGTGAAGAAGAACTTGCTCACTGGTCATTACCAGAGGATGATCTCATTTTACTGGCTATTGTTGGTCTGAAGGATCCTTGTCGACCTGGTGTCAAAGATGCAGTGCAGCTTTGCCAAAAAGCTGGGGTTAAGGTCAGAATGGTCACTGGTGACAATGTTAAAACTGCAAAAGCAATTGCTGTGGAATGTGGAATACTTAGTTCATCTGATGATGCTACAGAGCCAAGCATTATTGAAGGAAAAACATTCCGTGCCTTGACAGATGAAGAGAGAGAAGAAATTGTTGAAAGGATATCGGTTATGGGAAGGTCATCTCCTAATGACAAGCTTTTGCTTGTGCAAGCATTGAGGAGGAAGGGGCATGTTGTGGCTGTAACTGGGGATGGAACAAATGATGCTCCAGCACTACATGAGGCCGATATAGGTCTTGCAATGGGTATCCAAGGTACAGAAGTTGCTAAAGAGAGCTCTGACATCATTATTTTGGATGACAATTTTGCTTCAGTTGTGAAGGTTGTCAAATGGGGGCGGTCTGTGTATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTCAATATAGCAGCTCTTGTTATAAATGTTGTTGCTGCATTTTCCTCTGGTGACATCCCACTAAATACAGTACAGCTTCTCTGGGTAAATCTTATCATGGATACTCTTGGAGCACTAGCCTTGGCAACTGAACCACCAACTGATCACCTTATGGATCAGCTTCCAGTGGGTCGAAGAGAACCTCTTGTAACAAATGTTATGTGGAGGAATCTGCTGATACAGGCAATGTACCAAGTGTCCGTCTTGCTTATACTCAATTTCCGAGGCAGGAGCATACTGAGTCTGAGGCACGAGGCCAACGCAGTCAAAGTGAAGAACACTCTGATATTCAATGCATTTGTTCTTTGTCAAGTTTTTAATGAATTTAATGCACGAAAGCCAGACGAGTTCAACATATTCAAGGGGGTTACCAGAAACTACCTCTTCATGGGGATAGTGGGATTAACTATTGTGCTTCAGATTGTCATCATTGAATTTCTTGGAAAGTTCACTAAAACAGTCAAGCTTAATTGGAAGCAGTGGCTCATCTCTGTCATTATAGGATTTATCAGCTGGCCTCTTGCTGTGGTCGGAAAACTGATACCAGTACCAGCGACTCCCATGAATAACTTCTTTCGAATATTTCGTTGTGGAAGAACTTAA 3189 0.4218 MNLSNGRSSPCGQTQRDLEAGSPSSSSPDFDGGEDNSDPFDITRTKNASIQRLKRWRFAIDLEVQNYSLKQAALVLNASRRFRYTLDLKKEEERKQILKLVTVHARVIQAAYRFKEAEKVNGTIVPPSSSSGEFSIGQEKLSSISREHDTTALREYGGVVGLSHLLKTNLEKGIQGDDADLVKRRNTFGSNNYPRKKGRSILMFIWDACKDLTLIILMVAAIASLALGIKSEGIKEGWYDGGSIAFAVILVIVVTGDVIPLNIGNQVPADGILITGHSLAIDESSMTGESKIVDKHSKEPFLMSGCKVAGGSGTMLVTAVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIAGLSVAAIVLIVLLARYFSGHTKNPDGSVQFIAGKTRVGDAIDGAIKIVTVAVTIVVVAVPEGLPLAVTLTLDGYAASHNMGAIAHYGLAYSMKKMMEDKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEACIGGKKIVPPDKKSQLSPMLCSLLIEGVAQNTNGSVYVRESGNGVEVSGSPTEKAILQWGIQLGMDFEAARSESSIIHVFPFNSDKKRGGVAIQTTDSEIHIHWKGAAEIVLACCTGYIDTNDQLVEMDEEKMTVFKKVIEDMAADSLRCVAIAYRLYEMENVPTSEEELAHWSLPEDDLILLAIVGLKDPCRPGVKDAVQLCQKAGVKVRMVTGDNVKTAKAIAVECGILSSSDDATEPSIIEGKTFRALTDEEREEIVERISVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVKWGRSVYANIQKFIQFQLTVNIAALVINVVAAFSSGDIPLNTVQLLWVNLIMDTLGALALATEPPTDHLMDQLPVGRREPLVTNVMWRNLLIQAMYQVSVLLILNFRGRSILSLRHEANAVKVKNTLIFNAFVLCQVFNEFNARKPDEFNIFKGVTRNYLFMGIVGLTIVLQIVIIEFLGKFTKTVKLNWKQWLISVIIGFISWPLAVVGKLIPVPATPMNNFFRIFRCGRT 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi314g00023 1062 ProSitePatterns E1-E2 ATPases phosphorylation site. 477 483 IPR018303 -
Sebi314g00023 1062 Pfam E1-E2 ATPase 253 428 - -
Sebi314g00023 1062 Gene3D - 527 683 IPR023299 GO:0000166
Sebi314g00023 1062 FunFam Calcium-transporting ATPase 9 plasma membrane-type 312 499 - -
Sebi314g00023 1062 Pfam Cation transporting ATPase, C-terminus 868 1043 IPR006068 -
Sebi314g00023 1062 FunFam Calcium-transporting ATPase 800 1047 - -
Sebi314g00023 1062 SFLD Haloacid Dehalogenase 457 835 - -
Sebi314g00023 1062 Pfam Cation transporter/ATPase, N-terminus 158 224 IPR004014 -
Sebi314g00023 1062 SMART Cation_ATPase_N_a_2 155 229 IPR004014 -
Sebi314g00023 1062 MobiDBLite consensus disorder prediction 1 43 - -
Sebi314g00023 1062 NCBIfam calcium-translocating P-type ATPase, PMCA-type 253 1045 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Sebi314g00023 1062 SUPERFAMILY HAD-like 473 888 IPR036412 -
Sebi314g00023 1062 SFLD p-type atpase 457 835 IPR044492 -
Sebi314g00023 1062 Gene3D - 311 500 - -
Sebi314g00023 1062 Gene3D - 684 799 IPR023214 -
Sebi314g00023 1062 SUPERFAMILY Calcium ATPase, transduction domain A 253 331 IPR008250 -
Sebi314g00023 1062 Pfam Ca2+-ATPase N terminal autoinhibitory domain 71 93 IPR024750 GO:0005516
Sebi314g00023 1062 Gene3D - 162 310 - -
Sebi314g00023 1062 Gene3D - 800 1047 - -
Sebi314g00023 1062 MobiDBLite consensus disorder prediction 1 32 - -
Sebi314g00023 1062 PANTHER CATION TRANSPORTING ATPASE 128 255 - -
Sebi314g00023 1062 FunFam Calcium-transporting ATPase 485 683 - -
Sebi314g00023 1062 Pfam haloacid dehalogenase-like hydrolase 472 797 - -
Sebi314g00023 1062 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 482 680 IPR023299 GO:0000166
Sebi314g00023 1062 FunFam Calcium-transporting ATPase 676 828 - -
Sebi314g00023 1062 Gene3D - 48 117 - -
Sebi314g00023 1062 PRINTS P-type cation-transporting ATPase superfamily signature 676 687 - -
Sebi314g00023 1062 PRINTS P-type cation-transporting ATPase superfamily signature 282 296 - -
Sebi314g00023 1062 PRINTS P-type cation-transporting ATPase superfamily signature 783 802 - -
Sebi314g00023 1062 PRINTS P-type cation-transporting ATPase superfamily signature 475 489 - -
Sebi314g00023 1062 PRINTS P-type cation-transporting ATPase superfamily signature 807 819 - -
Sebi314g00023 1062 PRINTS P-type cation-transporting ATPase superfamily signature 698 708 - -
Sebi314g00023 1062 SUPERFAMILY Calcium ATPase, transmembrane domain M 158 1045 IPR023298 -
Sebi314g00023 1062 NCBIfam HAD-IC family P-type ATPase 749 863 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi314g00023 Sebi-Chr314 290487 305329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi314g00023 8 1061 Primary Pumps ATPases AT4G29900 66.758 0.0 1454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi314g00023 K01537 - gmx:100790157 1652.49