Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi314g00015 ATGGACAATATTGGTGACGAGTACAAGCATTATTGGGAGACCAACATCAACTGGGGATTAGATCTAGATGAGGCGTTCTCCGGATACTATGATTCGAGTTCCCCTGACGGTGGCGCTAATTCGTCTGTGGCATCGACGACTAAGAACATTGCCGCTGAGAGGAATAGAAGGAAGAAGCTGAACGAAAGGCTTTTTGCACTTAGAGCAGTGGTTCCCAATATTAGCAAGATGGATAAGGCTTCTATCATCAAGGATGCTATTGACTACATCAACCACTTGCATGACCAGGAGAAGACAATCCAAGCTCAGATCATCGATCTTCAATCTGCACCACCTAACCACGACCTTCCTATTTTGCTCAGGTCCAACAACAAGAGAGAACAACAACTTCATAATTCTTCAACAAATTATTCCCCAATTGAAATTATCGAGCTGAGGGTTACATACATGGGAGAGAAAACGTTTGTGGTGAGCTTGACATGCTGTAAGAAGACAGACACAATGGTAAAACTGTTTGAGGTGTTCGAATCTTTGAAGCTCAAGATCATCACAGCCAATATCACTTCTTTTTCAGGAACGCTTTTCAAAACAGTCTTCATCGAGGTGGTTTGTGATGCTGGTTCGATCAATGGCAAGGGTGTGCCTGGCTCTTGTGCCGGTTAA 663 0.4374 MDNIGDEYKHYWETNINWGLDLDEAFSGYYDSSSPDGGANSSVASTTKNIAAERNRRKKLNERLFALRAVVPNISKMDKASIIKDAIDYINHLHDQEKTIQAQIIDLQSAPPNHDLPILLRSNNKREQQLHNSSTNYSPIEIIELRVTYMGEKTFVVSLTCCKKTDTMVKLFEVFESLKLKIITANITSFSGTLFKTVFIEVVCDAGSINGKGVPGSCAG 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi314g00015 220 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 109 IPR036638 GO:0046983
Sebi314g00015 220 Gene3D - 40 110 IPR036638 GO:0046983
Sebi314g00015 220 Coils Coil 43 63 - -
Sebi314g00015 220 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 35 206 - -
Sebi314g00015 220 SMART finulus 50 99 IPR011598 GO:0046983
Sebi314g00015 220 Pfam Helix-loop-helix DNA-binding domain 48 94 IPR011598 GO:0046983
Sebi314g00015 220 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 93 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi314g00015 Sebi-Chr314 168570 169901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi314g00015 1 203 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 54.795 9.44e-72 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi314g00015 HLH 2.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi314g00015 - - gmx:100817978 273.863