Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi314g00011 ATGTCTTCGTGTTTGAGTGGAACAGGAGGAAGAACGTATGGATTTGATTTAGATTTTGTTAAATCTCCATCTTCATGGAGTCGAACTTCACAGACATCTTCTTCTCCTTCCTCAACCATCTCTGAATCCAGCAATTCACAATTGGCAATCTCCACCAGAAAACCCAGAACCCCGAGAAAGCGACCTAACCAAACCTACAACGAAGCTGCCGCACTCCTTTCCACAGCATACCCGAACCTGTTCTCTACAAAGAACCTCAAAACACCACCGGCTAATAAATTCACCAAACCAGAGGCATCGGAAACGGAAGATTTCGACGCCGAATCGATTCTCGATGAGGAAATTGAGGAAGGGATCGATAGCATCATGGGGAGTAGGGTTGAGGAGGATTCCAATGGCGCATCTAGTCACCATCCATGGATTGATTTTGGCGGGAAATTCGATTTCCGGCTTGGGTTGCAGAGAGCAGGGAAACCGAAAGTGGAGTTGAACGAAGCGGAATTGCCCAAACCGAACCCTGGTTTGATGTTGAAATTGAATTTCGACGATATTCGGAATGCTTGGTCTGACCGGGGCTCGCCGTTCGCCGACGATAGCCCCGCCTCCGACGTACCGGGAAGTGACGTCACTGCGCGGCTGTCGCAAATTGATTTGTTATGGGACAATGGAGGAGTGAGGGAAGCTAGCGTGCTGCGCTACAAAGAAAAGCGGCGTACACGCCTCTTCTCTAAGAAGATCAGATACCAGGTCAGGAAAGTCAACGCAGATCGACGGCCCAGAATGAAGTTTCTTTTTGTTATGGAGAGTGGACCCCATTGTGGTGGTTGGTCACTTTGTCCCACTTTTCAGGATCTATCTTATTCAACTTTGCCCACTGCAATGTTTAGGGGCGATTTGTTAGGAGGCCGAATTCTAGCTCAAATGCACACAGATGATAAAGATAAGCGGGAGAAAAGGCTGGATGAGATAAGCAACGAAGGAACAAGGAATGAGATTGTGGCCCTCTGTACCTATAAATATTCTTGGTCCTGGCACACAGTAACCAAGCACGATCCCCTTCCTCTCACTCTCAGCCTTGCTCCTCCGCAGCCGGCGCCGGCCAACCACGAAACAGAGACAGAGGCGCATAAAGGAAAGAAACCAGTAGAGATCGAGATCGAGACAAAGACAAAGGCGTGGAAAGGAGATAAAGTAATCCTAAATCACCTCAAGATGACATCTCCAGAGACTGTTACATTCATGGAACTAGCAATACAGCAGGCAAAACTAGCTTTGAATGCCCTTGAAGTGCCTGTTGGCTGTGTAATCGTTGAAGATGGAAAGGTTATAGCCTCAGGCAGGAATCGAACTACCGAGACACGAAATGCTACGAGGCATGCAGAAATGGAAGCTATAGATGTGCTTCTGGAGCAATGGCAGAAAAATGGACTTTCAATGTCTGAAGTTGCTGAAAAATTCTCAAACTGCAGTCTTTATGTTACCTGTGAACCATGCATAATGTGTGCTTCTGCTTTATCAATTTTAGGTATAAAGGAAGTATTTTATGGCTGTTCAAATGATAAATTTGGAGGTTGTGGATCAATATTATCATTGCATTTAAGTAACACTACATCACCTAATAAGGGTTTCAAATGTACTGGAGGTATAATGGCATCGGAAGCTGTCCTTCTCCTGCGAACATTCTATGATCAAGGAAATCCGAATGCTCCAAAGCCGCACAGGCCTCTAGCACGTCAGGCATGA 1743 0.463 MSSCLSGTGGRTYGFDLDFVKSPSSWSRTSQTSSSPSSTISESSNSQLAISTRKPRTPRKRPNQTYNEAAALLSTAYPNLFSTKNLKTPPANKFTKPEASETEDFDAESILDEEIEEGIDSIMGSRVEEDSNGASSHHPWIDFGGKFDFRLGLQRAGKPKVELNEAELPKPNPGLMLKLNFDDIRNAWSDRGSPFADDSPASDVPGSDVTARLSQIDLLWDNGGVREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKFLFVMESGPHCGGWSLCPTFQDLSYSTLPTAMFRGDLLGGRILAQMHTDDKDKREKRLDEISNEGTRNEIVALCTYKYSWSWHTVTKHDPLPLTLSLAPPQPAPANHETETEAHKGKKPVEIEIETKTKAWKGDKVILNHLKMTSPETVTFMELAIQQAKLALNALEVPVGCVIVEDGKVIASGRNRTTETRNATRHAEMEAIDVLLEQWQKNGLSMSEVAEKFSNCSLYVTCEPCIMCASALSILGIKEVFYGCSNDKFGGCGSILSLHLSNTTSPNKGFKCTGGIMASEAVLLLRTFYDQGNPNAPKPHRPLARQA 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi314g00011 580 ProSitePatterns Cytidine and deoxycytidylate deaminases zinc-binding region signature. 459 505 IPR016192 GO:0008270|GO:0016787
Sebi314g00011 580 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 408 536 IPR002125 -
Sebi314g00011 580 Gene3D Cytidine Deaminase, domain 2 405 575 - -
Sebi314g00011 580 SUPERFAMILY Cytidine deaminase-like 407 567 IPR016193 GO:0003824
Sebi314g00011 580 Pfam CCT motif 226 266 IPR010402 GO:0005515
Sebi314g00011 580 MobiDBLite consensus disorder prediction 24 63 - -
Sebi314g00011 580 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 412 516 IPR002125 -
Sebi314g00011 580 MobiDBLite consensus disorder prediction 24 53 - -
Sebi314g00011 580 MobiDBLite consensus disorder prediction 84 105 - -
Sebi314g00011 580 ProSiteProfiles CCT domain profile. 226 268 IPR010402 GO:0005515
Sebi314g00011 580 CDD nucleoside_deaminase 414 530 - -
Sebi314g00011 580 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 268 - -
Sebi314g00011 580 FunFam tRNA-specific adenosine deaminase 2 406 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi314g00011 Sebi-Chr314 130273 139767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi314g00011 175 266 C2C2-CO-like Transcription Factor Family AT1G25440 41.593 2.91e-16 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sebi314g00011 dCMP_cyt_deam_1 1.2e-21 CL0109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi314g00011 K15441 - gmx:100817106 315.849