Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi314g00010 ATGCGGGATAGTGAGAAGAAGTTAAAGAATGGAAGATCTAAAAAATCCAGTCATTTGGAGGCACGCACAAAGTGCCAAGGGAAGAAGCACAAACTGGAATCAAAATCTCAAACACACAGTGTTGGGAATAATATATCAAGAAAGAGAGTTACTGACTCTTCCCACAAGGGGCCACACAAGGATTCTTCAAATAAGAAATTCATTATTCGACAGAAATTACATAAAACTGGCAGAAAATCTTCACAGAAGCCATCCTCAAAGCTACAAGACAAGAAAGTTTCTCTTAGTTCTAGAACAGAGGGAAAAGATGCTGAGGGAGAGCTAGAGCAGAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAGAGTCGAGAAAAGATTAGGCCAGAAAAGGAGCTACAAAGAGCACGAAAGCAGATTTTAAAATGTAAACTTGGTATTCGTGATGCTATTCGCCAGTTGGATTCTCTTAGTTCCCTGAGTAGCATTGAAGATTCTGCCATGGCTTCAGATGGATCTGTTCACCATGAACATATATTCTGTGCAAAGTGCAAGCTGCGTGAAGCTCTTCCAGATAATGACATTATACTCTGTCATGGTACATGTAATCGTGCTTTTCACCAAAAATGTCATGATCCTCCTCTAGACACTGAAAATATTCCTCCAGGAGAGCAGGGCTGGCTTTGTAAATTTTGTGAGTGTAAGATGAAAATACTGGAGGCAATGAATGCCCATCTTGGAACTCGCTTCTCCTTTAACAGTAATTGGCAGGATGTATTCAAAGAAGAAGCTGCTCTACCTGATGGTGATACTGCATTACTGAATCCTGAAGAAGAATGGCCATCCGATGATTCTGAAGATGATGATTATAATCCAGAAAGGAGAGAGGATGGTCACGATATCAACACAGAAGGAACTGATGGTTTAAGCTGTTCCACCAGTCTGTGTTCTTCTGATGGTGAATGTTCTCTGGTAGATGATGGTGTGAGTCATGAATATTTTTCTGTCAATAGCAGCATAGATTCTGATGAGTCTGAGGAAAAAGCTTGTGGCCCTAGACAGCGAAAAGCTGTTGACTACAAGAAACTTTATGATGAAATGTTTGGGAAGGATGTTCCTGCATGTGAGCAAGTGAGTGAAGATGAAGACTGGGGTCCTAGCAAAAGAAAGAGAAGAGAAAAGGAGTCTGATGCTGTTGATACTCTTATGACGTTGCATGAAAGTGAGAATAAGCATCCCAATAATGAGCACAACAACATGACAAGAAGGGATTCTTCAGACATAAATGTCAGAAGGCATTGTTTTAGGATTCCGCGCGATGCGGTTGAGAAGCTTCGCCATGTTTTTGCCGAGAACGAACTTCCTCCAAGATCTGTTAAGGAGGGTCTTTCAAAAGAGTTGGGACTTGATACTGAGAAGGTCAGCAAATGGTTCAAAAATGCACGTTACTCAGCTCTCAAAACAAGAAAGCAAGCAGGAGGAGCAGATCAGCTTCCGAGTATCACTTCTAGGAAGAACTCTAATCAGGAGAAAGCTGATCCTTTGAAATCAAAGACCTCAGGAGTTACTTTGCTGGATTCCGCAAAGAATGTTGAAAATGTTGCTGGTAGAAAGAAAATAAAGCAACAAAAAATGTTGCCACTCCAGCCAATAGAAAATGGCAATAAGGACTTTAAGGAGGTCAGTGATGATGTGAGCTTGAAGAAGCTGTTGAAAGAGAGAAAGAGGAGGGTAAATTTTCCATTTGAAGGAGACTCTGAAGCTGCAGAGTTGGAACTTGAAAGACTAAGCAAATTGAAGATTAAAGTAGATAGTATGAAGCAAAAATTAATTGGAATTCAAAATAAGGGTTCAGATGAACCTCCTTCGAATGAACCATCTATTATATATGTACCCACAGCTGTATTAAGGGAAAAGGTTGACTTATAA 1935 0.4041 MRDSEKKLKNGRSKKSSHLEARTKCQGKKHKLESKSQTHSVGNNISRKRVTDSSHKGPHKDSSNKKFIIRQKLHKTGRKSSQKPSSKLQDKKVSLSSRTEGKDAEGELEQNLIDAYSGEGWKGQSREKIRPEKELQRARKQILKCKLGIRDAIRQLDSLSSLSSIEDSAMASDGSVHHEHIFCAKCKLREALPDNDIILCHGTCNRAFHQKCHDPPLDTENIPPGEQGWLCKFCECKMKILEAMNAHLGTRFSFNSNWQDVFKEEAALPDGDTALLNPEEEWPSDDSEDDDYNPERREDGHDINTEGTDGLSCSTSLCSSDGECSLVDDGVSHEYFSVNSSIDSDESEEKACGPRQRKAVDYKKLYDEMFGKDVPACEQVSEDEDWGPSKRKRREKESDAVDTLMTLHESENKHPNNEHNNMTRRDSSDINVRRHCFRIPRDAVEKLRHVFAENELPPRSVKEGLSKELGLDTEKVSKWFKNARYSALKTRKQAGGADQLPSITSRKNSNQEKADPLKSKTSGVTLLDSAKNVENVAGRKKIKQQKMLPLQPIENGNKDFKEVSDDVSLKKLLKERKRRVNFPFEGDSEAAELELERLSKLKIKVDSMKQKLIGIQNKGSDEPPSNEPSIIYVPTAVLREKVDL 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi314g00010 644 MobiDBLite consensus disorder prediction 93 109 - -
Sebi314g00010 644 MobiDBLite consensus disorder prediction 497 519 - -
Sebi314g00010 644 SMART HOX_1 432 494 IPR001356 GO:0003677
Sebi314g00010 644 Pfam Homeodomain 441 485 IPR001356 GO:0003677
Sebi314g00010 644 MobiDBLite consensus disorder prediction 376 400 - -
Sebi314g00010 644 MobiDBLite consensus disorder prediction 49 68 - -
Sebi314g00010 644 CDD PHD_PRHA_like 182 234 IPR045876 -
Sebi314g00010 644 Gene3D - 432 495 - -
Sebi314g00010 644 FunFam pathogenesis-related homeodomain protein 432 496 - -
Sebi314g00010 644 SUPERFAMILY Homeodomain-like 433 496 IPR009057 -
Sebi314g00010 644 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 231 IPR013083 -
Sebi314g00010 644 SMART PHD_3 182 235 IPR001965 -
Sebi314g00010 644 Pfam PHD-finger 182 237 IPR019787 -
Sebi314g00010 644 ProSitePatterns Zinc finger PHD-type signature. 183 234 IPR019786 -
Sebi314g00010 644 SUPERFAMILY FYVE/PHD zinc finger 173 240 IPR011011 -
Sebi314g00010 644 CDD homeodomain 438 493 IPR001356 GO:0003677
Sebi314g00010 644 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 10 642 - -
Sebi314g00010 644 Coils Coil 591 618 - -
Sebi314g00010 644 MobiDBLite consensus disorder prediction 269 312 - -
Sebi314g00010 644 FunFam pathogenesis-related homeodomain protein-like 174 234 - -
Sebi314g00010 644 MobiDBLite consensus disorder prediction 1 36 - -
Sebi314g00010 644 ProSiteProfiles Zinc finger PHD-type profile. 180 237 IPR019787 -
Sebi314g00010 644 ProSiteProfiles 'Homeobox' domain profile. 430 490 IPR001356 GO:0003677
Sebi314g00010 644 MobiDBLite consensus disorder prediction 1 109 - -
Sebi314g00010 644 MobiDBLite consensus disorder prediction 279 293 - -
Sebi314g00010 644 MobiDBLite consensus disorder prediction 490 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi314g00010 Sebi-Chr314 125152 129692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi314g00010 90 492 Homeobox Transcription Factor Family AT4G29940 56.386 5.61e-145 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Sebi314g00010 Homeodomain 4.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi314g00010 - - gmx:100817639 910.212