Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi314g00001 ATGTCATCGTTGATGAACATAGCTCCTCAAAAAGCAGTCATAGCTGAGACAGGGGAAGTTGTGGACGCTGATGAGGTGAAAGTAAACACCATCCTAGCAGTTAAAGCAGGGGAGGTGATACCCATTGATGGAGTTGTTTTAGATGGAAACTGTGAAGTTGACGAGAAAACATTGACTGGGGAATCATTCCCAGTAGCCAAACAAAAGGATTCTGCTGTTTGGGCTGGCACCATCAATTTAAATGGTTATGTTAGTGTGAAAACTACCGCACTAGCTGAAGATTGTGTGGTGGCTAAAATGGCCAAGCTTGTGGAAGAAGCTCAAAACAGCAAAACCAGCACTCAGAGATTGATTGACAAGTTTGCCAAGTTTTATACCCCAGTCATATCAACTCTTGTAGCGGTGATTCCAATTGTGTTAAAAGTACATAACGAGAAACACTGGCTTCACTTTGCACTGGTTATTTTGGTAAGTGCATGTCCATGTGCACTTATCCTTTCAACGCCAGTTGCAACTTTTTGTGCTTATACGAAAGCAGCTACATCAGGTCTTCTCATCAAAGGGGGTGATTATCTTGAAACACTTGCAAAAGTTAAGGTCATGGCTTTTGACAAAACGGGTACCATAACAAAGGGTGAATTTGTGGTGACAAATTTTCAATCTCTCTCAGATGACATTGATTTGAACACATTGGCTTACTGGGTATCAAGCATTGAGAGCAAGTCAAGCCATCCATTGGCAGCAGCAATTGTTGATTATGGAAGGTCTCTTTCCATTGAACCAAAACCAGAAAAGGTGACGGAGTTTGAAAATTTTCCTGGAGAAGGAATATGTGGAAAAATTGATGAGAGAGTTCTTTACATTGGAAACAAAAAAATTGCCACAAGAGCAGGGTCTGAAACAGTTCCCACCTTACAAGGTGATGCTCAGAGAGGAAAGACCACTGGGTACATATTCTCTGGAGCAACCCCAGTTGGAATATTCTCTCTAACTGATGCTTGTAGATCAGGGGTTCAGGAGGCAATAGGGCAGCTGAAGTTGTTGGGAATCAAAACCGCTATGCTCACTGGAGATTGTCAATCAGCTGCAATGCAAGCACAGGAGCAGAAGTGTGCCTCCCAGACATGTCTCTCAAAGTGTCCACCCTGCCCTTCAAATTCAAGTTTATGTGGAAGTGTTAACCATGTTAACATCATGGTGGATCATGATCAATGTAAGGGAAGTGATAAGTTCCATGAACCAGATCACTGTCATCACAGAAGATGTGACAAGAATCAAGAAAGAGTCCCGAAGCATGATATTGAAAACAAGGGCTGTTTAGATTCGCATGATTTGATTCTAAATGCAGAAGATAATGATGCAGTTGCAATAGACAGCCATGGTAATTGTTTGGGACATAAGTCCCACGGGGCAAAACATTGTCACAACCAAAATGTTGACAAGGTTACTCCTGACAGCACTTCACTTAGTTCATCTTGCCATCTCAATCTCCCTTGTCAAAAAGAAGGCCAACAGTTTGCTAAACACCGCCACATGATCCATGGTTGTGAAAATCACAAAGACCATGAATCCAGAAATATGTCAGGATCCAATCATGGCATTCAGCATAAAAAATCAGGTTGCCATTCTGATTTTAAGAAGTGTGGGACAGGTGAAATATCCATTGACATCATCAATGAGGATGTTGAATCAGCCTCGATGCATGGTTGTTTAAGTTTGGAAGAGAAAGGAAAAGATTCCTGTTGTAAAGGCAGCTCAGACACATGTGAGAAATTGCCAGTTGTGTTTGGCTGTGAAAGTTTAGATAAGAGAGAAATTAGTGCATGCTGCAGACATGACGGCTCTTCAAAAGAATCCATGGAATCCTCTATTATGCATGCTTGTGTTAGTTTGGACAAGAGAGAAGTTGGTGGATGTTGCAAGAGCTACATGAAGGAATGTTGTGGCAAGCATGGACACTCAGGAGCTGGTTTTGTTGGAGGTTTATCAGAAATTATCACAGAATAG 2007 0.4175 MSSLMNIAPQKAVIAETGEVVDADEVKVNTILAVKAGEVIPIDGVVLDGNCEVDEKTLTGESFPVAKQKDSAVWAGTINLNGYVSVKTTALAEDCVVAKMAKLVEEAQNSKTSTQRLIDKFAKFYTPVISTLVAVIPIVLKVHNEKHWLHFALVILVSACPCALILSTPVATFCAYTKAATSGLLIKGGDYLETLAKVKVMAFDKTGTITKGEFVVTNFQSLSDDIDLNTLAYWVSSIESKSSHPLAAAIVDYGRSLSIEPKPEKVTEFENFPGEGICGKIDERVLYIGNKKIATRAGSETVPTLQGDAQRGKTTGYIFSGATPVGIFSLTDACRSGVQEAIGQLKLLGIKTAMLTGDCQSAAMQAQEQKCASQTCLSKCPPCPSNSSLCGSVNHVNIMVDHDQCKGSDKFHEPDHCHHRRCDKNQERVPKHDIENKGCLDSHDLILNAEDNDAVAIDSHGNCLGHKSHGAKHCHNQNVDKVTPDSTSLSSSCHLNLPCQKEGQQFAKHRHMIHGCENHKDHESRNMSGSNHGIQHKKSGCHSDFKKCGTGEISIDIINEDVESASMHGCLSLEEKGKDSCCKGSSDTCEKLPVVFGCESLDKREISACCRHDGSSKESMESSIMHACVSLDKREVGGCCKSYMKECCGKHGHSGAGFVGGLSEIITE 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi314g00001 668 NCBIfam HAD-IC family P-type ATPase 7 365 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi314g00001 668 SUPERFAMILY Calcium ATPase, transduction domain A 19 104 IPR008250 -
Sebi314g00001 668 ProSitePatterns E1-E2 ATPases phosphorylation site. 204 210 IPR018303 -
Sebi314g00001 668 Pfam haloacid dehalogenase-like hydrolase 198 369 - -
Sebi314g00001 668 SUPERFAMILY Calcium ATPase, transmembrane domain M 105 196 IPR023298 -
Sebi314g00001 668 SUPERFAMILY HAD-like 195 367 IPR036412 -
Sebi314g00001 668 NCBIfam heavy metal translocating P-type ATPase 1 369 IPR027256 GO:0006812|GO:0016020|GO:0019829
Sebi314g00001 668 Gene3D - 1 108 - -
Sebi314g00001 668 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 1 369 - -
Sebi314g00001 668 FunFam Copper-transporting ATPase 1, putative 1 108 - -
Sebi314g00001 668 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 204 330 IPR023299 GO:0000166
Sebi314g00001 668 Pfam E1-E2 ATPase 15 180 - -
Sebi314g00001 668 Gene3D - 214 332 IPR023299 GO:0000166
Sebi314g00001 668 Gene3D - 170 385 IPR023214 -
Sebi314g00001 668 FunFam Putative cadmium/zinc-transporting ATPase 3 213 334 - -
Sebi314g00001 668 PRINTS P-type cation-transporting ATPase superfamily signature 202 216 - -
Sebi314g00001 668 PRINTS P-type cation-transporting ATPase superfamily signature 54 68 - -
Sebi314g00001 668 PRINTS P-type cation-transporting ATPase superfamily signature 326 337 - -
Sebi314g00001 668 PRINTS P-type cation-transporting ATPase superfamily signature 348 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi314g00001 Sebi-Chr314 1756 6021 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi314g00001 1 369 Primary Pumps ATPases AT4G30110 72.312 0.0 559
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi314g00001 K01534 - gmx:100817567 660.218