Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi313g00034 ATGGCCCAAAAACTAATTTTATTTATTTATGATGATCTAGCGGAGCTGGAATGGCTTTCGAATTTCGTGGAGGAATCGTTTTCGAGCGAGGACCTGCAAAAGCTGCAGCTGATATCAGGGGTGAAAGCCCGAAAGTACGATGAAGCAGCATCAGCAGAGGCCCGCGAGTTCCAGTCCGAGCCCAACCGAAACAGCCCCATATTCAACACGGAGGTGTCGGTTCCAGCGAAGGCCCGCAGCAAGAGGACCCGTGGGCCGCCATGCAACTGGACCTCACGTCTCCTCGTCCTGTCACCAACGCCAACGACGTCGTCTTCCGACCCTGAAGTCGTCATTCCCACTCCTACCCTGCCCTCCGTTACTGTTCCCATCACTACAAAGAAACCAGCTAAGGCAGCTCCGAGGAAGAAGGACGGCGGTGACAGCAGTGGCTCAGGGTCCGGCGACGGCCGCAAGTGCCTGCATTGCGCTACGGACAAGACGCCACAGTGGCGAACCGGGCCCATGGGTCCAAAGACTCTGTGCAACGCTTGCGGCGTGAGGTATAAGTCGGGCCGGTTGGTGCCGGAATACAGGCCCGCGGCGAGCCCAACGTTCGTGCTGACGAAGCACTCCAACTCGCACCGTAAGGTGCTGGAGCTGCGAAGGCAGAAGGAAATGGTGCGGTCCCAGCAGCACCAACAGCAGCCGTTCCTACACCATCATCACCATCAGAATATGGTGTTCGATATATCCAACGGTGATGATTACTTGATCCACCAACATGTTGGACCCGATTTTAGGCAGCTGATCTAG 795 0.5635 MAQKLILFIYDDLAELEWLSNFVEESFSSEDLQKLQLISGVKARKYDEAASAEAREFQSEPNRNSPIFNTEVSVPAKARSKRTRGPPCNWTSRLLVLSPTPTTSSSDPEVVIPTPTLPSVTVPITTKKPAKAAPRKKDGGDSSGSGSGDGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVRSQQHQQQPFLHHHHHQNMVFDISNGDDYLIHQHVGPDFRQLI 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi313g00034 264 PANTHER GATA TRANSCRIPTION FACTOR 11 227 - -
Sebi313g00034 264 PIRSF Txn_fac_GATA_plant 2 243 IPR016679 GO:0003677|GO:0005634|GO:0045893
Sebi313g00034 264 ProSiteProfiles GATA-type zinc finger domain profile. 147 183 IPR000679 GO:0006355|GO:0043565
Sebi313g00034 264 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 149 211 - -
Sebi313g00034 264 MobiDBLite consensus disorder prediction 99 123 - -
Sebi313g00034 264 SMART GATA_3 147 197 IPR000679 GO:0006355|GO:0043565
Sebi313g00034 264 MobiDBLite consensus disorder prediction 99 152 - -
Sebi313g00034 264 Gene3D - 146 197 IPR013088 GO:0006355|GO:0008270
Sebi313g00034 264 ProSitePatterns GATA-type zinc finger domain. 153 178 IPR000679 GO:0006355|GO:0043565
Sebi313g00034 264 MobiDBLite consensus disorder prediction 75 94 - -
Sebi313g00034 264 CDD ZnF_GATA 152 199 IPR000679 GO:0006355|GO:0043565
Sebi313g00034 264 Pfam GATA zinc finger 153 186 IPR000679 GO:0006355|GO:0043565
Sebi313g00034 264 FunFam GATA transcription factor 144 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi313g00034 Sebi-Chr313 947875 948797 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi313g00034 11 264 C2C2-Gata Transcription Factor Family AT5G25830 58.779 1.55e-93 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sebi313g00034 GATA 2.2e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi313g00034 - - zju:107420464 370.548