Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi313g00017 ATGCAAGTGGAAATGTTCTGGCACAAAGTTGATTCTAGGGTGCTAAGGGATGAGAATGGTGTTGCTTTTCCTGTTAATTTGTCATTGTCTTTGAACGGGAAGGTTGCTTACATCAAAAAGGGATGGAAGGAGTTTAGTTTGGAGAAGAATCTGGAGAGGGGCTCTATTGTCAGATTTAGAGTTGATCCTTCTGATTCTGGAGTTATCCATACAAAAGTCCTTGAAGCATGTTCTGAACCTTTCTTCATAGCAATGACTTCGAGATATGATTTTATTAAGGATGTTAATGGTGGATCTGAATATAAGATATGGAGGCTGAAAGTAAGGGTTATCCGTTTATGGAGATTTGCTAACTTTCAGGAAAACAACAACAGTAATGTTAAACCAATGATAGAGATGGTGGTTATTGATGAGCAGAGGGAAACTGAGGTTCGTTTGGTTGAGGATTCCACCATTCCGGTAAATGCTTTCTGTTTTGTTCCATACAATGATATTCTCAATGAAAGTAATGAAGAACGTCATTTAGTTGATGTTGTTGGTCTTCTTTCTGCCAAAGGAGACCTTATTGAGTTTAAAAGAAATGGGAAAGTCTGTAACTATTTGGTTATTGAGCTCGATAATCTTGAGCAGTTGGATGAGGATTCCTTTGCTATCCATGTTGTTGTGTTGCAATTTGCTAAAATGAAATATTTCAAAGGAACAATGGGGGTTTCTAATAACACATATAATAGTAAGTTATTTCTGAATCCCCAAGTTCCAGAGGTTGATTCATTGAAGACATCTGATGAAAATTATAGTCAGCCTGTAACTCAACTGCCTGGCCATGTGACATTGACTGCTGAAGAAGAGTTTCTTAACAGATTAGAATACAAGACAATTGCTGAACTTAAAGATGTTAATCAGTATGGGGTTTATTCAACCGTTGGCACTATCAAAGAGATTGAATCAGAGTACAATTGGTGTTATCGTGGGTGCAAAAAGTGTTCATATGGGATGAAAATTGATGGAAATATGTTCTATTGTAAGAATTGTAACATTCACTATTCAACGTTTGTTACGAGGTATGAGACGTTACTATGTGTAGTTTAA 1089 0.3655 MQVEMFWHKVDSRVLRDENGVAFPVNLSLSLNGKVAYIKKGWKEFSLEKNLERGSIVRFRVDPSDSGVIHTKVLEACSEPFFIAMTSRYDFIKDVNGGSEYKIWRLKVRVIRLWRFANFQENNNSNVKPMIEMVVIDEQRETEVRLVEDSTIPVNAFCFVPYNDILNESNEERHLVDVVGLLSAKGDLIEFKRNGKVCNYLVIELDNLEQLDEDSFAIHVVVLQFAKMKYFKGTMGVSNNTYNSKLFLNPQVPEVDSLKTSDENYSQPVTQLPGHVTLTAEEEFLNRLEYKTIAELKDVNQYGVYSTVGTIKEIESEYNWCYRGCKKCSYGMKIDGNMFYCKNCNIHYSTFVTRYETLLCVV 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi313g00017 362 SUPERFAMILY Nucleic acid-binding proteins 159 267 IPR012340 -
Sebi313g00017 362 Gene3D - 151 270 IPR012340 -
Sebi313g00017 362 SUPERFAMILY Nucleic acid-binding proteins 289 359 IPR012340 -
Sebi313g00017 362 Gene3D - 279 362 IPR012340 -
Sebi313g00017 362 PANTHER OS03G0429900 PROTEIN 240 351 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi313g00017 362 CDD B3_DNA 14 66 IPR003340 GO:0003677
Sebi313g00017 362 Gene3D - 3 77 IPR015300 -
Sebi313g00017 362 SUPERFAMILY DNA-binding pseudobarrel domain 14 65 IPR015300 -
Sebi313g00017 362 ProSiteProfiles B3 DNA-binding domain profile. 1 77 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi313g00017 Sebi-Chr313 453743 456377 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi313g00017 148 345 Core DNA Replication Machinery Family AT2G06510 23.077 2.08e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi313g00017 - - adu:107477146 208.379