Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi313g00008 ATGTGTTATGAAGATGGCCACCCGGTTGAAGGGAAGGGTGTTGGGAGAAAGGTCATGGATAAACTTTGTAAAAGATATGGTGTGTTGCTTAACAAGAACTTTGCATATGATGGTGATAAAAGCTTATTCACTGTTGGTTCTCTACCACATGATAAGGAGGAGTTCGAAGTTGTGTTGGAGGAAGTTTCTTCAAAGAGAACTGACTTGGAGCTGTTTTTCTGGGTTGGAAGGAATGGGAGCCCTGACAACTCAAATGATGGAAACTCCAAGAGAATGAGGTGTCAATCTCAGTCTAAGTCTAAAACTGTTAAGGTGAAGATCAGTGATGCAGGCAAAATCCCAATGCAATGCCAAGAAGCGTTGAGGGTTCTGAACATTATAATGAGGCAAGGATGTCTCCTTGTTCGCAAATCCTTCTTTCATGACAATCCAAGAAATTATACTGATATAGGAGGTGGTGTTCAAGGTTGTCGTGGTTTGCATTCAAGCTTCCGAGTTACACAAGGGGGTTTATCTCTGAATGTTGATGTGTCAAATACAATGGTTGTAAAGCCTGGTCCTGTGCTGGACTTCCTTCTCCAGAATCAGAATGTTCAACAACCAAACTTAATTGATTGGGCCAAGGCAGAAAGAGTGCTGAAAAGCCTCAGAATTAAGGCTAATAATATTGAGTACAAAATCACTGGACTGAGTGAGAAGCGCTGCAGGACACAGACGTTTTTATTAGAACACGGAAAGGATGCCAATGGTGAAGTGCAGTCAAGTGAGATCACGGTTTATGACTACTTCAAACTCCATGAAAAGATTGAACTACACTGTTCTGCTGATTTGCCATGCATCAATGTTGGCAAACCAAAGAGCCCGACTTATTTTCCTGTAGAGTCCTTAAGAAGCAGCATATATAATTATCCTATGCTTCAGTCTTCTGGGATTAACATTGAACCAGGGTTAACTATAGTTGATGGACGTAGTCTGGAAGATCCATGGCTTGTAGTTGGACAGGGAGAGGAAATTTATCCATACTTTGGTAGGCCCTGGAATTTCAACAATAAGAAACTAATTGAACCTGTGAAGATTGAGCACTGGGCCATTGTAAACTTCTCAGCTTGGTGTGATACAAGAAATCTATGCAACACTCTTGAGCATTGTGCTGAAATGATAGGGACGCACTTAAATCCTCCAATCCAAATAATTGAAGAGGATAGTCGCTTCAGGCATGATCCAGCACATGTCAGGGTTGACAAAATGTATGAAATTTTAAAGGCCAAGATGCCTAAGAACCCTCCGATTCAGCTTCTATTGTGTATTCTTCCAGAGAGAAAGAATTCTGCTATTTATGGGCCTTGGAAAAGGAGAAATCTGGTTGATGAAGGAGTTGCAACACAATGTATTGCACCAACAAAAATTAATGATCGGTATATTACTAATGTTCTTTTGAAAATTAATGCAAAGCTTGGTGGCATGAATTTCTCTCTGGGTTACATACCTCAAGTTTCTAAGGAACCTACCTGGATTCTTGGCATGGCTGTTTCACATGGATCTCCTGGTAGATCAGATGTACCACATCTATTGCTGCGAGCTGCAGTTGGTACTCAGTCATCCAAAGTTGAGATGATTGCATCTCTATTTAAGCCTGTTTCTGATATCGAGGATGAGGGTATCATCAGGGAGCTGCTTATGGACTTTTACATAACTTCAGGGAAAAGGAAGCCTGAGAATATAATAATTTTCAGGAATGGAGTGAGTGAAACACAGTTCAACCAAGTCCTGAACATTGAATTGGATGAAATCATTAAGGCATGCAAACATCTTGATGAGAAGTGGACTCCAAAGTTTACTTTGATTGTTGCGCAGAAGAGACATCATACTAGAGATATTTGTGAACCCAAAAACAATGACTTCTACATGTATGCTCATGCTGGGAAGATTGGGACAAGTCGCCCTACTCATTACCATGTTTTACGTAACGAAATGGGGTTCTCAGCAGATGATTTGCAAGAACTTGTGTATCATCTATCTTTTGTTTGCCCCGTTCACTATGCTCACTTGGCAGCTGCCCAGATGGCCCAAATTATGAAGTTTGATGAAATGTCTGATACTTCTTCCAGCCATGGTGGACTGAGATCTGTTGGTGTACCTCAAGTTCCTCAACCTTCACGAAAATGTCATTAA 2172 0.4093 MCYEDGHPVEGKGVGRKVMDKLCKRYGVLLNKNFAYDGDKSLFTVGSLPHDKEEFEVVLEEVSSKRTDLELFFWVGRNGSPDNSNDGNSKRMRCQSQSKSKTVKVKISDAGKIPMQCQEALRVLNIIMRQGCLLVRKSFFHDNPRNYTDIGGGVQGCRGLHSSFRVTQGGLSLNVDVSNTMVVKPGPVLDFLLQNQNVQQPNLIDWAKAERVLKSLRIKANNIEYKITGLSEKRCRTQTFLLEHGKDANGEVQSSEITVYDYFKLHEKIELHCSADLPCINVGKPKSPTYFPVESLRSSIYNYPMLQSSGINIEPGLTIVDGRSLEDPWLVVGQGEEIYPYFGRPWNFNNKKLIEPVKIEHWAIVNFSAWCDTRNLCNTLEHCAEMIGTHLNPPIQIIEEDSRFRHDPAHVRVDKMYEILKAKMPKNPPIQLLLCILPERKNSAIYGPWKRRNLVDEGVATQCIAPTKINDRYITNVLLKINAKLGGMNFSLGYIPQVSKEPTWILGMAVSHGSPGRSDVPHLLLRAAVGTQSSKVEMIASLFKPVSDIEDEGIIRELLMDFYITSGKRKPENIIIFRNGVSETQFNQVLNIELDEIIKACKHLDEKWTPKFTLIVAQKRHHTRDICEPKNNDFYMYAHAGKIGTSRPTHYHVLRNEMGFSADDLQELVYHLSFVCPVHYAHLAAAQMAQIMKFDEMSDTSSSHGGLRSVGVPQVPQPSRKCH 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi313g00008 723 CDD PAZ_argonaute_like 185 294 - -
Sebi313g00008 723 Gene3D - 495 624 IPR036397 GO:0003676
Sebi313g00008 723 Gene3D - 625 721 IPR036397 GO:0003676
Sebi313g00008 723 SMART DUF1785_2 133 185 IPR014811 -
Sebi313g00008 723 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 18 695 - -
Sebi313g00008 723 SMART Piwi_a_2 432 693 IPR003165 GO:0003676
Sebi313g00008 723 ProSiteProfiles Piwi domain profile. 432 624 IPR003165 GO:0003676
Sebi313g00008 723 Pfam PAZ domain 189 297 IPR003100 GO:0005515
Sebi313g00008 723 MobiDBLite consensus disorder prediction 702 723 - -
Sebi313g00008 723 Gene3D - 325 493 - -
Sebi313g00008 723 SUPERFAMILY PAZ domain 175 295 IPR036085 GO:0005515
Sebi313g00008 723 Pfam Piwi domain 433 624 IPR003165 GO:0003676
Sebi313g00008 723 Pfam Piwi domain 626 692 IPR003165 GO:0003676
Sebi313g00008 723 Pfam N-terminal domain of argonaute 10 128 IPR032474 -
Sebi313g00008 723 Pfam Argonaute linker 1 domain 135 183 IPR014811 -
Sebi313g00008 723 SUPERFAMILY Ribonuclease H-like 415 691 IPR012337 -
Sebi313g00008 723 Gene3D paz domain 179 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi313g00008 Sebi-Chr313 91039 96354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi313g00008 9 711 Eukaryotic Initiation Factors Gene Family AT1G48410 30.833 7.19e-90 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi313g00008 K11593 - vvi:100241029 841.262