Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi313g00002 ATGGAGGGAGGTGGCAGCGAGAGATCTGACACTGAGTCAATGATGTATAGTGAAGACGTCCTTGAGAGCACGAGTGATGATCCTGTTAGCAATGGGGAGATACCTGAAGAAGGTGAAGATGGAGTTCCGTTGACCGAAGGTGTTGTTGAAGAAGATAGTGAGGAAAGTGAAGATGAAAATGAATCTGGGGATAAATATAGGATTGATGGAGGTGATGAAATCCGAAAAGTAGACATGATAAGAATAAGTGTAGATGAGTTCAAGTTGTATCACTTTATAAGTCGTTCAGTTGCTTTTGAGTTCTATAATAAGTATGGTCTGAAAAGAGGATTTGCTGCTAGAAAATGGAACACAGTTGTAAACAAGGAAGGTAGAGTCACACAACAAACATTTGTTTGTTTCAGGGAGGGATATCGTTTGAAAAAACACCTGAAGAAGGAGAATCGTAAGAGGGAGGCGAGAGCAATAACTAGGTGTGGTTGTTCTGCATTTATGAAAGTGCGTTATGTAGGAGATGTAAGTCGTTGGATTGTTAAAGGTTTCTCTGATGAGCATAGTCATGAGTTGTTACCTAGGAAATACGAGGGAATGATAACTTCACACCGGAAGATGAATGAAACAGACATAGTGCAAATGAATACCATGCGGGAAGTTGGTATAGGTGTTACACAAATATATGGGTTAGCGGCGAATCAATCTGGAGGATATAAAAATGTTGGTTACAGGAAAACTGACATGTACAATGAAATAATTAAACAAAGAAGATCTGAAGGGTGTGATGCGAAGAGCAACCAATGGTTAACAGATCTGTATGGAAAGAGGAAGATGTGGGCTACTGCCCACATACGTGGTAGCTTCTTTGCTGGATTTAGGACAACCTCTAGGCAGAAGGAGTTGGAGGCTGACTTTGAATCAATTAATGGAGATCCTGTTCTAGAAACACCTTTTGAAGAAATTGAAGCATGCGCATCAAAGTTGTATAGTAGGAAGGTGTTTATCAAGTTTAGAGCTGTGCTTTGGAGGGCATGTAAGTTGAAGGTTAGTGGATGTGAGCTGACCCCAAACTGTCACATATATATTGTGACAAGCAGAGCAACATCTGGAAGAGAGTGGCATGTGTCATATGTTGCACAAAATGAAAAAGTGAAGTGTTCTTGTCAACGGATGGAGTCAATGGGTATCCCATGTGAGCATATTGTTGTTCTCCTACACTACCTTGATATAAAACAATTGCCCAAATCACTTATTCTAGAAAGGTGGACAAAGTATGCAAAGCAATGTGTGGATGATGGTGATTTGGGTAGTTGTAGTACTGACGGTTCTATGTGGAAGAGTCAAGTCATATCCTTGTTGTTTGATTGTTATGAGATGTGCCGACTTGTGGGCAAAAGGATTGACAAATTGGAGGAAACAAGAGGAGTTATTAGGAATCATATGCAAAGTTTGAAAGACATTGATGAAGATGGAAACACTGATGAAGGTAATGATAGGGAAGGGGATGACATTAACCTCAGGGATCCTTCGCGAGTAAGGAGTAAAGGTTGTGGATCGAGGCAGTCTACAGGTGGTAGTAGAGGAAATAGGAGGACCACTACATGCAGCGTATGCCAAGGACGGGGGCACAACAAACAGACCTGTCGACTTCGTACTAGGCAACCACATGGGGAGACAAATGAAACAGCATCCAGTGGAGATGAGATAAATGAGTGA 1710 0.4135 MEGGGSERSDTESMMYSEDVLESTSDDPVSNGEIPEEGEDGVPLTEGVVEEDSEESEDENESGDKYRIDGGDEIRKVDMIRISVDEFKLYHFISRSVAFEFYNKYGLKRGFAARKWNTVVNKEGRVTQQTFVCFREGYRLKKHLKKENRKREARAITRCGCSAFMKVRYVGDVSRWIVKGFSDEHSHELLPRKYEGMITSHRKMNETDIVQMNTMREVGIGVTQIYGLAANQSGGYKNVGYRKTDMYNEIIKQRRSEGCDAKSNQWLTDLYGKRKMWATAHIRGSFFAGFRTTSRQKELEADFESINGDPVLETPFEEIEACASKLYSRKVFIKFRAVLWRACKLKVSGCELTPNCHIYIVTSRATSGREWHVSYVAQNEKVKCSCQRMESMGIPCEHIVVLLHYLDIKQLPKSLILERWTKYAKQCVDDGDLGSCSTDGSMWKSQVISLLFDCYEMCRLVGKRIDKLEETRGVIRNHMQSLKDIDEDGNTDEGNDREGDDINLRDPSRVRSKGCGSRQSTGGSRGNRRTTTCSVCQGRGHNKQTCRLRTRQPHGETNETASSGDEINE 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi313g00002 569 MobiDBLite consensus disorder prediction 1 15 - -
Sebi313g00002 569 MobiDBLite consensus disorder prediction 484 569 - -
Sebi313g00002 569 MobiDBLite consensus disorder prediction 39 59 - -
Sebi313g00002 569 SMART 26again6 382 409 IPR006564 GO:0008270
Sebi313g00002 569 MobiDBLite consensus disorder prediction 513 543 - -
Sebi313g00002 569 MobiDBLite consensus disorder prediction 555 569 - -
Sebi313g00002 569 Pfam SWIM zinc finger 378 406 IPR007527 GO:0008270
Sebi313g00002 569 ProSiteProfiles Zinc finger SWIM-type profile. 371 407 IPR007527 GO:0008270
Sebi313g00002 569 MobiDBLite consensus disorder prediction 1 68 - -
Sebi313g00002 569 PANTHER OS01G0519700 PROTEIN 93 256 - -
Sebi313g00002 569 MobiDBLite consensus disorder prediction 16 30 - -
Sebi313g00002 569 MobiDBLite consensus disorder prediction 484 512 - -
Sebi313g00002 569 Pfam FAR1 DNA-binding domain 100 191 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi313g00002 Sebi-Chr313 42888 45360 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sebi313g00002 FAR1 9.7e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi313g00002 - - tpra:123905832 211.075