Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi312g00039 ATGGCCATGGATCCCACAAAGAAGCGCAAGCTTGACGAGAACGGCTTTGGCGGCGGCGGCGATTCTGATCACCTAAAGCTCTCCCCGGTGGACGCCCGTAAGATCATCGAGCGGTTCACCCCCGACCAGCTCCTTGACATCCTCCAGGACGCCGTCGTTCGCCACGCCGACGTGCTCGCAGCCGTCCGCGCCGTCGCCGACCCTGATGTCTCCCAGCGCAAGCTCTTCATCCGTGGTCTCGGTTGGGACACCACCACCGATGGCCTCCGGTCCCTCTTTCCACCTACGGGGACCTCGAAGAGGCCGTCGTTGATCCTCGACAAGGCCACTGGAAAGTCTAAGGGCTACGGCTTCGTCACCTTCCGCCACGTCGATGGTGCCCTCCTCGCCCTCCGCGAGCCCAGCAAGCGCATCGACGGGCGCGTCACCGTCACACAACTCGCCGCCGCCGGCAATTCTGGCTCTAATACCAATGCAGCCGACATAGCGCTCCGCAAGATTTACGTTGCTAACGTTCCTCCGGATCTCCCAGCGGACAAGCTCCTCGCCCACTTCTCCATCTACGGTGAGATCGAAGAAGGTCCATTGGGCTTCGACAAGCAGACAGGAAAGTCTAAGGGATTCGCGCTCTTCGTGTATAAGACCCCCGAGGGGGCTCAAGCGGCACTCTCAGATCCCGTGAAGACCGTGGAGGGAAGACAGCTGAATTGCAAGCTGGCGATAACTGACAATAAGCAAGGTAAGCGTGGTGGGCCCGGTCCGGTTGGACCGGATGGGGTTCAGGGCCATGGGAATGCTCATGGACATCATGGTGATGGGATGGGGATGCCTCCGGCAGCGGGTTCTGGTCCCGGGTCACTTTCGGGTCAGTATGGCGGCCCGGTTGGTTTGGGTTCTTATGGTGGGTTTGGAGGTGGGCTTCAGGGTCAGCCTCCGCTGGGTAATCATCCCATGAATTCATCGGTTGGTGGGTTGTCTTCGGTGGGGAATCAGGGGCCATCGGCGATGGGCGGTGCTGGCGGGTACGGTGCTGGGCTGGGTGGTCATTATGGGGGATATGGTGGGCCTGGGTCGACGGGATTTGGTGGATTGGGCGGTGCTGGTGGTGCTGGTGCTGGTGGTTTGGGAGCAGGTGGTGCGGGTGCGGGTGCCGCTGGGGACTTGGTGGTTCCGGTGGTGGTTTGGGTGGCGCAGAATCAACATCATCCTCCTGCTGGGGCGTCACCTGTACCTAGGGTTCCCCCGGGTTCAATGTATCCAAATGTGCCCCCTTACTACTGA 1281 0.6112 MAMDPTKKRKLDENGFGGGGDSDHLKLSPVDARKIIERFTPDQLLDILQDAVVRHADVLAAVRAVADPDVSQRKLFIRGLGWDTTTDGLRSLFPPTGTSKRPSLILDKATGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAAAGNSGSNTNAADIALRKIYVANVPPDLPADKLLAHFSIYGEIEEGPLGFDKQTGKSKGFALFVYKTPEGAQAALSDPVKTVEGRQLNCKLAITDNKQGKRGGPGPVGPDGVQGHGNAHGHHGDGMGMPPAAGSGPGSLSGQYGGPVGLGSYGGFGGGLQGQPPLGNHPMNSSVGGLSSVGNQGPSAMGGAGGYGAGLGGHYGGYGGPGSTGFGGLGGAGGAGAGGLGAGGAGAGAAGDLVVPVVVWVAQNQHHPPAGASPVPRVPPGSMYPNVPPYY 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi312g00039 426 SUPERFAMILY RNA-binding domain, RBD 66 150 IPR035979 GO:0003676
Sebi312g00039 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 246 IPR000504 GO:0003723
Sebi312g00039 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 150 IPR000504 GO:0003723
Sebi312g00039 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 234 IPR000504 GO:0003723
Sebi312g00039 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 142 IPR000504 GO:0003723
Sebi312g00039 426 SMART rrm1_1 74 146 IPR000504 GO:0003723
Sebi312g00039 426 SMART rrm1_1 166 238 IPR000504 GO:0003723
Sebi312g00039 426 MobiDBLite consensus disorder prediction 1 19 - -
Sebi312g00039 426 Gene3D - 159 276 IPR012677 -
Sebi312g00039 426 SUPERFAMILY RNA-binding domain, RBD 158 271 IPR035979 GO:0003676
Sebi312g00039 426 MobiDBLite consensus disorder prediction 241 329 - -
Sebi312g00039 426 Gene3D - 55 158 IPR012677 -
Sebi312g00039 426 PANTHER GEO13361P1-RELATED 57 336 - -
Sebi312g00039 426 MobiDBLite consensus disorder prediction 313 329 - -
Sebi312g00039 426 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi312g00039 Sebi-Chr312 968016 969391 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi312g00039 161 240 C2H2 Transcription Factor Family AT2G19380 41.250 5.17e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi312g00039 K12741 - gmx:100776220 415.231