Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi312g00029 ATGACTTGTTGCTCTCATCTTTTCAGAAAAAAAGGGCCTCCCTCAACCACACGATTCAATGGAGTTGATATAGATATTTCAGAAATTCAGAATGTCAACATTTACGCTTACAAGGAGTTGCAAATTGCCACAGAAAATTTTAGTCCCGCAAGAAAGATAGGGCAGGGAGGAAAGCTGAAAGATGGTTCTCTAGTAGCTATAAAAGTTCTATCAGCTGAATCAAGGCAAGGGGTCCGGGAATTCTTGACAGAAATCAAGGTGATCACTAGTATAGAACATGAGAATCTAGTTAAGTTGTATGGATGCTGTGTGGATGACAACCACAGGATTCTGGTATATGGCTATCTTGAGAATAATAGCCTAGCACAAACACTTCTCGGTTCAAGCCATAGTAGCATCCAATTCAGTTGGCATGTAAGGCGGAACATTTGCATAGGTGTTGTCCGGGGCCTTGCATTCCTTCATGAGGAGGTTCGGCCACATATTATTCATAGAGACATAAAAGCCAGCAATGTACTACTTGACAAAGACCTCCAACCCAAAATTTCAGATTTTGGCCTTGCAAAGCTTATTCCTCCAAACTTGACCCATATTAGTACAAGGGTTGCTGGAACAGTTGGTTATCTGGCACCTGAGTATGCAATACGAAATCAAGTGACAAGAAAATCAGACATCTATAGTTTTGGAGTTCTACTATTAGAAATTGTTAGTGGGAGGCCTAACACAAACAGACGTTTACCTGTTGAAGAACAGTATCTTCTTACAAGGGATTCTCCTCAGCTCCGCCCTTCTATGTCCACTGTGCTTGACATGCTTGTAGGTGAAAAAGATGTGAATGAGGAGAATATTGTAAAACCAGGCGTGATATTTGAATTTGTGGAAGCCACATGGAAGGGAAACAAAAAAGCAAGTCTGAAGTGGAAAGTACATCTTTGTTGGCTGGTTCAAGGAAGCAAGATGATTCATCTTCATCAGGAACTGTGA 984 0.4106 MTCCSHLFRKKGPPSTTRFNGVDIDISEIQNVNIYAYKELQIATENFSPARKIGQGGKLKDGSLVAIKVLSAESRQGVREFLTEIKVITSIEHENLVKLYGCCVDDNHRILVYGYLENNSLAQTLLGSSHSSIQFSWHVRRNICIGVVRGLAFLHEEVRPHIIHRDIKASNVLLDKDLQPKISDFGLAKLIPPNLTHISTRVAGTVGYLAPEYAIRNQVTRKSDIYSFGVLLLEIVSGRPNTNRRLPVEEQYLLTRDSPQLRPSMSTVLDMLVGEKDVNEENIVKPGVIFEFVEATWKGNKKASLKWKVHLCWLVQGSKMIHLHQEL 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi312g00029 327 ProSiteProfiles Protein kinase domain profile. 26 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi312g00029 327 FunFam Os07g0541700 protein 116 205 - -
Sebi312g00029 327 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 255 - -
Sebi312g00029 327 Gene3D Transferase(Phosphotransferase) domain 1 116 287 - -
Sebi312g00029 327 Pfam Protein kinase domain 58 243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi312g00029 327 Gene3D Phosphorylase Kinase; domain 1 23 115 - -
Sebi312g00029 327 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Sebi312g00029 327 SUPERFAMILY Protein kinase-like (PK-like) 23 272 IPR011009 -
Sebi312g00029 327 SMART serkin_6 47 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi312g00029 Sebi-Chr312 765819 768447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi312g00029 23 280 Receptor kinase-like Gene Family AT1G07650 46.926 1.97e-83 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi312g00029 Pkinase 3.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi312g00029 - - gmx:100801735 498.819