Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi311g00042 ATGAACCACCACCACGAAGAGAAAGTCACCATGGACCTTGTTCCACCATCTGAACACCTCTGCTACGTCCGTTGCAACTTCTGTAACACTGTTCTCGCTGTTGGCATCCCATGCAAGAGGCTGCTAGACACTGTGACAGTCAAGTGTGGTCACTGCAGCAACCTCTCCTTTCTCAGCACCAGACCTCCTCCTCATTCTCAGAACCAAAACCAAACCATTGATCACACCCTCACTCTCCAGGGGTTTTACAGTAGTGATGGGAAAAAGGGGCAAGCATCCTCTTCATCCTACTCATCACCAACTACATCCACCGACTCTGTCTCCCCTAAGGCACCACCATTTGTTGTTAAACCACCTGAGAAGAAGCACCGTCTCCCATCTGCTTACAACCGTTTCATGAAAGAGGAGATCCAGCGCATCAAAACAGCCAACCCTCAGATCCCACATCGAGAAGCTTTCAGCGCTGCAGCCAAAAATTGGGCTAGGTTCATTCCAAATTCTCCAACCACTTCAGTTTCTGCAACTAAAAATAATATTGAATGA 543 0.4807 MNHHHEEKVTMDLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPPHSQNQNQTIDHTLTLQGFYSSDGKKGQASSSSYSSPTTSTDSVSPKAPPFVVKPPEKKHRLPSAYNRFMKEEIQRIKTANPQIPHREAFSAAAKNWARFIPNSPTTSVSATKNNIE 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi311g00042 180 Coils Coil 179 180 - -
Sebi311g00042 180 Pfam YABBY protein 16 163 IPR006780 GO:0007275
Sebi311g00042 180 PANTHER PROTEIN YABBY 6-RELATED 16 171 IPR006780 GO:0007275
Sebi311g00042 180 MobiDBLite consensus disorder prediction 84 122 - -
Sebi311g00042 180 FunFam protein CRABS CLAW isoform X3 115 175 - -
Sebi311g00042 180 CDD HMG-box_SF 124 160 - -
Sebi311g00042 180 MobiDBLite consensus disorder prediction 84 109 - -
Sebi311g00042 180 SUPERFAMILY HMG-box 106 161 IPR036910 -
Sebi311g00042 180 Gene3D High mobility group box domain 105 167 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi311g00042 Sebi-Chr311 677194 678316 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi311g00042 6 179 C2C2-YABBY Transcription Factor Family AT1G69180 63.277 6.82e-67 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Sebi311g00042 YABBY 4.8e-57 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi311g00042 K25796 - gmx:100819079 295.434